Literature DB >> 25561550

Programmable motion of DNA origami mechanisms.

Alexander E Marras1, Lifeng Zhou1, Hai-Jun Su1, Carlos E Castro2.   

Abstract

DNA origami enables the precise fabrication of nanoscale geometries. We demonstrate an approach to engineer complex and reversible motion of nanoscale DNA origami machine elements. We first design, fabricate, and characterize the mechanical behavior of flexible DNA origami rotational and linear joints that integrate stiff double-stranded DNA components and flexible single-stranded DNA components to constrain motion along a single degree of freedom and demonstrate the ability to tune the flexibility and range of motion. Multiple joints with simple 1D motion were then integrated into higher order mechanisms. One mechanism is a crank-slider that couples rotational and linear motion, and the other is a Bennett linkage that moves between a compacted bundle and an expanded frame configuration with a constrained 3D motion path. Finally, we demonstrate distributed actuation of the linkage using DNA input strands to achieve reversible conformational changes of the entire structure on ∼ minute timescales. Our results demonstrate programmable motion of 2D and 3D DNA origami mechanisms constructed following a macroscopic machine design approach.

Keywords:  DNA nanotechnology; DNA origami; dynamic structures; machine design; self-assembly

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Year:  2015        PMID: 25561550      PMCID: PMC4311804          DOI: 10.1073/pnas.1408869112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  58 in total

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2.  A two-state DNA lattice switched by DNA nanoactuator.

Authors:  Liping Feng; Sung Ha Park; John H Reif; Hao Yan
Journal:  Angew Chem Int Ed Engl       Date:  2003-09-22       Impact factor: 15.336

Review 3.  Molecular machines.

Authors:  C Mavroidis; A Dubey; M L Yarmush
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4.  Gold nanoparticle self-similar chain structure organized by DNA origami.

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Journal:  J Am Chem Soc       Date:  2010-03-17       Impact factor: 15.419

5.  DNA molecular motor driven micromechanical cantilever arrays.

Authors:  Wenmiao Shu; Dongsheng Liu; Moyu Watari; Christian K Riener; Torsten Strunz; Mark E Welland; Shankar Balasubramanian; Rachel A McKendry
Journal:  J Am Chem Soc       Date:  2005-12-07       Impact factor: 15.419

6.  Operation of a DNA robot arm inserted into a 2D DNA crystalline substrate.

Authors:  Baoquan Ding; Nadrian C Seeman
Journal:  Science       Date:  2006-12-08       Impact factor: 47.728

7.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

Review 8.  DNA nanomachines.

Authors:  Jonathan Bath; Andrew J Turberfield
Journal:  Nat Nanotechnol       Date:  2007-05       Impact factor: 39.213

9.  Cryo-EM structure of a 3D DNA-origami object.

Authors:  Xiao-Chen Bai; Thomas G Martin; Sjors H W Scheres; Hendrik Dietz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-19       Impact factor: 11.205

10.  Peptide Self-Assembly for Crafting Functional Biological Materials.

Authors:  John B Matson; R Helen Zha; Samuel I Stupp
Journal:  Curr Opin Solid State Mater Sci       Date:  2011-12       Impact factor: 11.354

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  66 in total

Review 1.  Artificial Molecular Machines.

Authors:  Sundus Erbas-Cakmak; David A Leigh; Charlie T McTernan; Alina L Nussbaumer
Journal:  Chem Rev       Date:  2015-09-08       Impact factor: 60.622

Review 2.  DNA Origami: Folded DNA-Nanodevices That Can Direct and Interpret Cell Behavior.

Authors:  Cathal J Kearney; Christopher R Lucas; Fergal J O'Brien; Carlos E Castro
Journal:  Adv Mater       Date:  2016-02-03       Impact factor: 30.849

3.  Nanomanufacturing: A Perspective.

Authors:  J Alexander Liddle; Gregg M Gallatin
Journal:  ACS Nano       Date:  2016-02-22       Impact factor: 15.881

Review 4.  Switchable DNA-origami nanostructures that respond to their environment and their applications.

Authors:  Jasleen Kaur Daljit Singh; Minh Tri Luu; Ali Abbas; Shelley F J Wickham
Journal:  Biophys Rev       Date:  2018-10-02

5.  Origami tubes with reconfigurable polygonal cross-sections.

Authors:  E T Filipov; G H Paulino; T Tachi
Journal:  Proc Math Phys Eng Sci       Date:  2016-01       Impact factor: 2.704

6.  The Effect of Basepair Mismatch on DNA Strand Displacement.

Authors:  D W Bo Broadwater; Harold D Kim
Journal:  Biophys J       Date:  2016-04-12       Impact factor: 4.033

7.  Choice of fluorophore affects dynamic DNA nanostructures.

Authors:  Kevin Jahnke; Helmut Grubmüller; Maxim Igaev; Kerstin Göpfrich
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

8.  Self-locking degree-4 vertex origami structures.

Authors:  Hongbin Fang; Suyi Li; K W Wang
Journal:  Proc Math Phys Eng Sci       Date:  2016-11       Impact factor: 2.704

9.  Biotechnological mass production of DNA origami.

Authors:  Florian Praetorius; Benjamin Kick; Karl L Behler; Maximilian N Honemann; Dirk Weuster-Botz; Hendrik Dietz
Journal:  Nature       Date:  2017-12-06       Impact factor: 49.962

10.  DNA Origami Rotaxanes: Tailored Synthesis and Controlled Structure Switching.

Authors:  John T Powell; Benjamin O Akhuetie-Oni; Zhao Zhang; Chenxiang Lin
Journal:  Angew Chem Int Ed Engl       Date:  2016-08-16       Impact factor: 15.336

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