Literature DB >> 33526425

The many bits of positional information.

Gašper Tkačik1, Thomas Gregor2,3.   

Abstract

Half a century after Lewis Wolpert's seminal conceptual advance on how cellular fates distribute in space, we provide a brief historical perspective on how the concept of positional information emerged and influenced the field of developmental biology and beyond. We focus on a modern interpretation of this concept in terms of information theory, largely centered on its application to cell specification in the early Drosophila embryo. We argue that a true physical variable (position) is encoded in local concentrations of patterning molecules, that this mapping is stochastic, and that the processes by which positions and corresponding cell fates are determined based on these concentrations need to take such stochasticity into account. With this approach, we shift the focus from biological mechanisms, molecules, genes and pathways to quantitative systems-level questions: where does positional information reside, how it is transformed and accessed during development, and what fundamental limits it is subject to?
© 2021. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  Developmental biology; Drosophila embryo; Lewis Wolpert; Pattern formation; Shannon information

Mesh:

Year:  2021        PMID: 33526425      PMCID: PMC7875500          DOI: 10.1242/dev.176065

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  117 in total

1.  Coding design of positional information for robust morphogenesis.

Authors:  Yoshihiro Morishita; Yoh Iwasa
Journal:  Biophys J       Date:  2011-11-15       Impact factor: 4.033

2.  Precision of the Dpp gradient.

Authors:  Tobias Bollenbach; Periklis Pantazis; Anna Kicheva; Christian Bökel; Marcos González-Gaitán; Frank Jülicher
Journal:  Development       Date:  2008-03       Impact factor: 6.868

3.  Mutual information, Fisher information, and population coding.

Authors:  N Brunel; J P Nadal
Journal:  Neural Comput       Date:  1998-10-01       Impact factor: 2.026

4.  Robustness in simple biochemical networks.

Authors:  N Barkai; S Leibler
Journal:  Nature       Date:  1997-06-26       Impact factor: 49.962

Review 5.  Using goal-driven deep learning models to understand sensory cortex.

Authors:  Daniel L K Yamins; James J DiCarlo
Journal:  Nat Neurosci       Date:  2016-03       Impact factor: 24.884

6.  The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner.

Authors:  W Driever; C Nüsslein-Volhard
Journal:  Cell       Date:  1988-07-01       Impact factor: 41.582

Review 7.  Unravelling cellular relationships during development and regeneration using genetic lineage tracing.

Authors:  Chloé S Baron; Alexander van Oudenaarden
Journal:  Nat Rev Mol Cell Biol       Date:  2019-11-05       Impact factor: 94.444

8.  Localization of the sevenless protein, a putative receptor for positional information, in the eye imaginal disc of Drosophila.

Authors:  A Tomlinson; D D Bowtell; E Hafen; G M Rubin
Journal:  Cell       Date:  1987-10-09       Impact factor: 41.582

9.  Activation of posterior gap gene expression in the Drosophila blastoderm.

Authors:  R Rivera-Pomar; X Lu; N Perrimon; H Taubert; H Jäckle
Journal:  Nature       Date:  1995-07-20       Impact factor: 49.962

10.  Maternal-effect mutations altering the anterior-posterior pattern of the Drosophila embryo.

Authors:  Trudi Schüpbach; Eric Wieschaus
Journal:  Rouxs Arch Dev Biol       Date:  1986-07
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  3 in total

1.  Latent space of a small genetic network: Geometry of dynamics and information.

Authors:  Rabea Seyboldt; Juliette Lavoie; Adrien Henry; Jules Vanaret; Mariela D Petkova; Thomas Gregor; Paul François
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-22       Impact factor: 12.779

Review 2.  Patterning, From Conifers to Consciousness: Turing's Theory and Order From Fluctuations.

Authors:  Thurston C Lacalli
Journal:  Front Cell Dev Biol       Date:  2022-05-03

3.  Precision of morphogen gradients in neural tube development.

Authors:  Roman Vetter; Dagmar Iber
Journal:  Nat Commun       Date:  2022-03-03       Impact factor: 14.919

  3 in total

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