Literature DB >> 20867274

Bacterial chromosomal loci move subdiffusively through a viscoelastic cytoplasm.

Stephanie C Weber1, Andrew J Spakowitz, Julie A Theriot.   

Abstract

Tracking of fluorescently labeled chromosomal loci in live bacterial cells reveals a robust scaling of the mean square displacement (MSD) as τ(0.39). We propose that the observed motion arises from relaxation of the Rouse modes of the DNA polymer within the viscoelastic environment of the cytoplasm. The time-averaged and ensemble-averaged MSD of chromosomal loci exhibit ergodicity, and the velocity autocorrelation function is negative at short time lags. These observations are most consistent with fractional Langevin motion and rule out a continuous time random walk model as an explanation for anomalous motion in vivo.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20867274      PMCID: PMC4929007          DOI: 10.1103/PhysRevLett.104.238102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  17 in total

1.  Anomalous diffusion of proteins due to molecular crowding.

Authors:  Daniel S Banks; Cécile Fradin
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

2.  Progressive segregation of the Escherichia coli chromosome.

Authors:  Henrik J Nielsen; Yongfang Li; Brenda Youngren; Flemming G Hansen; Stuart Austin
Journal:  Mol Microbiol       Date:  2006-06-12       Impact factor: 3.501

Review 3.  Chromosome territories--a functional nuclear landscape.

Authors:  Thomas Cremer; Marion Cremer; Steffen Dietzel; Stefan Müller; Irina Solovei; Stanislav Fakan
Journal:  Curr Opin Cell Biol       Date:  2006-05-09       Impact factor: 8.382

4.  Ergodic properties of fractional Brownian-Langevin motion.

Authors:  Weihua Deng; Eli Barkai
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-01-13

5.  Viscoelasticity in homogeneous protein solutions.

Authors:  Weichun Pan; Luis Filobelo; Ngoc D Q Pham; Oleg Galkin; Veselina V Uzunova; Peter G Vekilov
Journal:  Phys Rev Lett       Date:  2009-02-02       Impact factor: 9.161

Review 6.  Particle-tracking microrheology of living cells: principles and applications.

Authors:  Denis Wirtz
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

7.  Elucidating the origin of anomalous diffusion in crowded fluids.

Authors:  Jedrzej Szymanski; Matthias Weiss
Journal:  Phys Rev Lett       Date:  2009-07-15       Impact factor: 9.161

8.  Single-particle tracking: the distribution of diffusion coefficients.

Authors:  M J Saxton
Journal:  Biophys J       Date:  1997-04       Impact factor: 4.033

9.  Anomalous diffusion due to obstacles: a Monte Carlo study.

Authors:  M J Saxton
Journal:  Biophys J       Date:  1994-02       Impact factor: 4.033

10.  DNA dynamics vary according to macrodomain topography in the E. coli chromosome.

Authors:  Olivier Espeli; Romain Mercier; Frédéric Boccard
Journal:  Mol Microbiol       Date:  2008-04-11       Impact factor: 3.501

View more
  115 in total

1.  Nonthermal ATP-dependent fluctuations contribute to the in vivo motion of chromosomal loci.

Authors:  Stephanie C Weber; Andrew J Spakowitz; Julie A Theriot
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-19       Impact factor: 11.205

2.  Local motion analysis reveals impact of the dynamic cytoskeleton on intracellular subdiffusion.

Authors:  Marcus Otten; Amitabha Nandi; Delphine Arcizet; Mari Gorelashvili; Benjamin Lindner; Doris Heinrich
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

3.  Geometrical ordering of DNA in bacteria.

Authors:  Mathias Buenemann; Peter Lenz
Journal:  Commun Integr Biol       Date:  2011-05-01

4.  Analytical tools to distinguish the effects of localization error, confinement, and medium elasticity on the velocity autocorrelation function.

Authors:  Stephanie C Weber; Michael A Thompson; W E Moerner; Andrew J Spakowitz; Julie A Theriot
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

5.  Two-dimensional continuum percolation threshold for diffusing particles of nonzero radius.

Authors:  Michael J Saxton
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

6.  Physical Modeling of Dynamic Coupling between Chromosomal Loci.

Authors:  Thomas J Lampo; Andrew S Kennard; Andrew J Spakowitz
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

7.  Inferring diffusion dynamics from FCS in heterogeneous nuclear environments.

Authors:  Konstantinos Tsekouras; Amanda P Siegel; Richard N Day; Steve Pressé
Journal:  Biophys J       Date:  2015-07-07       Impact factor: 4.033

8.  Partitioning of RNA polymerase activity in live Escherichia coli from analysis of single-molecule diffusive trajectories.

Authors:  Somenath Bakshi; Renée M Dalrymple; Wenting Li; Heejun Choi; James C Weisshaar
Journal:  Biophys J       Date:  2013-12-17       Impact factor: 4.033

Review 9.  What we talk about when we talk about nuclear actin.

Authors:  Brittany J Belin; R Dyche Mullins
Journal:  Nucleus       Date:  2013-08-08       Impact factor: 4.197

10.  Evidence for a DNA-relay mechanism in ParABS-mediated chromosome segregation.

Authors:  Hoong Chuin Lim; Ivan Vladimirovich Surovtsev; Bruno Gabriel Beltran; Fang Huang; Jörg Bewersdorf; Christine Jacobs-Wagner
Journal:  Elife       Date:  2014-05-23       Impact factor: 8.140

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.