Literature DB >> 21980561

Geometrical ordering of DNA in bacteria.

Mathias Buenemann1, Peter Lenz.   

Abstract

The bacterium Caulobacter crescentus shows a remarkable spatial ordering of its chromosome that leads to a strong linear correlation between the position of genes on the chromosomal map and their spatial position in the cellular volume. In a recent study we have shown that a robust and universal geometrical ordering mechanism can explain this correlation. We demonstrated that self-avoidance of DNA, specific positioning of one or few DNA loci (such as origin or terminus) together with the action of DNA compaction proteins (that organize the chromosome into topological domains) are sufficient to get a linear arrangement of the chromosome along the cell axis. This configuration, however, only represents the population average. Individual cells can have DNA arrangements that deviate significantly from the mean configuration and that break left-right symmetry. Symmetry breaking is stronger for longer chromosomes.

Entities:  

Keywords:  DNA compaction; bacterial nucleoid; chromosome organization; theoretical model and simulation

Year:  2011        PMID: 21980561      PMCID: PMC3187889          DOI: 10.4161/cib.4.3.14891

Source DB:  PubMed          Journal:  Commun Integr Biol        ISSN: 1942-0889


  19 in total

1.  The segregation of the Escherichia coli origin and terminus of replication.

Authors:  Yongfang Li; Kirill Sergueev; Stuart Austin
Journal:  Mol Microbiol       Date:  2002-11       Impact factor: 3.501

2.  Rapid and sequential movement of individual chromosomal loci to specific subcellular locations during bacterial DNA replication.

Authors:  Patrick H Viollier; Martin Thanbichler; Patrick T McGrath; Lisandra West; Maliwan Meewan; Harley H McAdams; Lucy Shapiro
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-03       Impact factor: 11.205

3.  Topological domain structure of the Escherichia coli chromosome.

Authors:  Lisa Postow; Christine D Hardy; Javier Arsuaga; Nicholas R Cozzarelli
Journal:  Genes Dev       Date:  2004-07-15       Impact factor: 11.361

4.  Chromosome and replisome dynamics in E. coli: loss of sister cohesion triggers global chromosome movement and mediates chromosome segregation.

Authors:  David Bates; Nancy Kleckner
Journal:  Cell       Date:  2005-06-17       Impact factor: 41.582

Review 5.  Bacterial chromosome organization and segregation.

Authors:  Esteban Toro; Lucy Shapiro
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-02       Impact factor: 10.005

6.  Entropy-driven spatial organization of highly confined polymers: lessons for the bacterial chromosome.

Authors:  Suckjoon Jun; Bela Mulder
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-02       Impact factor: 11.205

7.  Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament.

Authors:  Paul A Wiggins; Keith C Cheveralls; Joshua S Martin; Robert Lintner; Jané Kondev
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-01       Impact factor: 11.205

Review 8.  Entropy as the driver of chromosome segregation.

Authors:  Suckjoon Jun; Andrew Wright
Journal:  Nat Rev Microbiol       Date:  2010-08       Impact factor: 60.633

9.  A geometrical model for DNA organization in bacteria.

Authors:  Mathias Buenemann; Peter Lenz
Journal:  PLoS One       Date:  2010-11-03       Impact factor: 3.240

10.  Non-random segregation of sister chromosomes in Escherichia coli.

Authors:  Martin A White; John K Eykelenboom; Manuel A Lopez-Vernaza; Emily Wilson; David R F Leach
Journal:  Nature       Date:  2008-10-30       Impact factor: 49.962

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  4 in total

1.  Bacterial chromosome organization by collective dynamics of SMC condensins.

Authors:  Christiaan A Miermans; Chase P Broedersz
Journal:  J R Soc Interface       Date:  2018-10-17       Impact factor: 4.118

2.  Machine learning classification of trajectories from molecular dynamics simulations of chromosome segregation.

Authors:  David Geisel; Peter Lenz
Journal:  PLoS One       Date:  2022-01-21       Impact factor: 3.240

3.  Chromosome Segregation in Bacillus subtilis Follows an Overall Pattern of Linear Movement and Is Highly Robust against Cell Cycle Perturbations.

Authors:  Nina El Najjar; David Geisel; Felix Schmidt; Simon Dersch; Benjamin Mayer; Raimo Hartmann; Bruno Eckhardt; Peter Lenz; Peter L Graumann
Journal:  mSphere       Date:  2020-06-17       Impact factor: 4.389

4.  Computational analyses of transcriptomic data reveal the dynamic organization of the Escherichia coli chromosome under different conditions.

Authors:  Qin Ma; Yanbin Yin; Mark A Schell; Han Zhang; Guojun Li; Ying Xu
Journal:  Nucleic Acids Res       Date:  2013-04-17       Impact factor: 16.971

  4 in total

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