Literature DB >> 20852602

Messy biology and the origins of evolutionary innovations.

Dan S Tawfik1.   

Abstract

Biological messiness relates to infidelity, heterogeneity, stochastic noise and variation--both genetic and phenotypic--at all levels, from single proteins to organisms. Messiness comes from the complexity and evolutionary history of biological systems and from the high cost of accuracy. For better or for worse, messiness is inherent to biology. It also provides the raw material for physiological and evolutionary adaptations to new challenges.

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Year:  2010        PMID: 20852602     DOI: 10.1038/nchembio.441

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  35 in total

1.  Visualizing high error levels during gene expression in living bacterial cells.

Authors:  Mor Meyerovich; Gideon Mamou; Sigal Ben-Yehuda
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-07       Impact factor: 11.205

2.  Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population.

Authors:  Marco Vignuzzi; Jeffrey K Stone; Jamie J Arnold; Craig E Cameron; Raul Andino
Journal:  Nature       Date:  2005-12-04       Impact factor: 49.962

Review 3.  Microbial cell individuality and the underlying sources of heterogeneity.

Authors:  Simon V Avery
Journal:  Nat Rev Microbiol       Date:  2006-08       Impact factor: 60.633

4.  Genetic properties influencing the evolvability of gene expression.

Authors:  Christian R Landry; Bernardo Lemos; Scott A Rifkin; W J Dickinson; Daniel L Hartl
Journal:  Science       Date:  2007-05-24       Impact factor: 47.728

Review 5.  The evolution of genetic networks by non-adaptive processes.

Authors:  Michael Lynch
Journal:  Nat Rev Genet       Date:  2007-10       Impact factor: 53.242

6.  Dynamic proteomics of individual cancer cells in response to a drug.

Authors:  A A Cohen; N Geva-Zatorsky; E Eden; M Frenkel-Morgenstern; I Issaeva; A Sigal; R Milo; C Cohen-Saidon; Y Liron; Z Kam; L Cohen; T Danon; N Perzov; U Alon
Journal:  Science       Date:  2008-11-20       Impact factor: 47.728

7.  Potential role of phenotypic mutations in the evolution of protein expression and stability.

Authors:  Moshe Goldsmith; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-01       Impact factor: 11.205

Review 8.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

9.  The evolution of the evolvability properties of the yeast prion [PSI+].

Authors:  Joanna Masel; Aviv Bergman
Journal:  Evolution       Date:  2003-07       Impact factor: 3.694

10.  Evolving biosynthetic tangos negotiate mechanistic landscapes.

Authors:  Michael B Austin; Paul E O'Maille; Joseph P Noel
Journal:  Nat Chem Biol       Date:  2008-04       Impact factor: 15.040

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  85 in total

1.  Plant tropane alkaloid biosynthesis evolved independently in the Solanaceae and Erythroxylaceae.

Authors:  Jan Jirschitzka; Gregor W Schmidt; Michael Reichelt; Bernd Schneider; Jonathan Gershenzon; John Charles D'Auria
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

Review 2.  Heterogeneous bacterial persisters and engineering approaches to eliminate them.

Authors:  Kyle R Allison; Mark P Brynildsen; James J Collins
Journal:  Curr Opin Microbiol       Date:  2011-09-19       Impact factor: 7.934

3.  Chemical biology: Synthetic metabolism goes green.

Authors:  Joseph P Noel
Journal:  Nature       Date:  2010-11-18       Impact factor: 49.962

4.  A metric and workflow for quality control in the analysis of heterogeneity in phenotypic profiles and screens.

Authors:  Albert Gough; Tong Ying Shun; D Lansing Taylor; Mark Schurdak
Journal:  Methods       Date:  2015-11-04       Impact factor: 3.608

5.  Widespread and enzyme-independent Nε-acetylation and Nε-succinylation of proteins in the chemical conditions of the mitochondrial matrix.

Authors:  Gregory R Wagner; R Mark Payne
Journal:  J Biol Chem       Date:  2013-08-13       Impact factor: 5.157

6.  Are we doing synthetic biology?

Authors:  Manuel Porcar; Juli Peretó
Journal:  Syst Synth Biol       Date:  2012-12-05

7.  Interplay of physics and evolution in the likely origin of protein biochemical function.

Authors:  Jeffrey Skolnick; Mu Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-20       Impact factor: 11.205

Review 8.  Assembly of nonheme Mn/Fe active sites in heterodinuclear metalloproteins.

Authors:  Julia J Griese; Vivek Srinivas; Martin Högbom
Journal:  J Biol Inorg Chem       Date:  2014-04-26       Impact factor: 3.358

9.  On the role of physics and evolution in dictating protein structure and function.

Authors:  Jeffrey Skolnick; Mu Gao; Hongyi Zhou
Journal:  Isr J Chem       Date:  2014-08-01       Impact factor: 3.333

10.  Lysine Biosynthesis of Thermococcus kodakarensis with the Capacity to Function as an Ornithine Biosynthetic System.

Authors:  Ayako Yoshida; Takeo Tomita; Haruyuki Atomi; Tomohisa Kuzuyama; Makoto Nishiyama
Journal:  J Biol Chem       Date:  2016-08-26       Impact factor: 5.157

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