Literature DB >> 20832728

Decapping activators in Saccharomyces cerevisiae act by multiple mechanisms.

Tracy Nissan1, Purusharth Rajyaguru, Meipei She, Haiwei Song, Roy Parker.   

Abstract

Eukaryotic mRNA degradation often occurs in a process whereby translation initiation is inhibited and the mRNA is targeted for decapping. In yeast cells, Pat1, Scd6, Edc3, and Dhh1 all function to promote decapping by an unknown mechanism(s). We demonstrate that purified Scd6 and a region of Pat1 directly repress translation in vitro by limiting the formation of a stable 48S preinitiation complex. Moreover, while Pat1, Edc3, Dhh1, and Scd6 all bind the decapping enzyme, only Pat1 and Edc3 enhance its activity. We also identify numerous direct interactions between Pat1, Dcp1, Dcp2, Dhh1, Scd6, Edc3, Xrn1, and the Lsm1-7 complex. These observations identify three classes of decapping activators that function to directly repress translation initiation and/or stimulate Dcp1/2. Moreover, Pat1 is identified as critical in mRNA decay by first inhibiting translation initiation, then serving as a scaffold to recruit components of the decapping complex, and finally activating Dcp2.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20832728      PMCID: PMC2946179          DOI: 10.1016/j.molcel.2010.08.025

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  44 in total

Review 1.  Eukaryotic mRNA decapping.

Authors:  Jeff Coller; Roy Parker
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

2.  Loss of translational control in yeast compromised for the major mRNA decay pathway.

Authors:  L E A Holmes; S G Campbell; S K De Long; A B Sachs; M P Ashe
Journal:  Mol Cell Biol       Date:  2004-04       Impact factor: 4.272

3.  Crystal structure of human Edc3 and its functional implications.

Authors:  Sharon H M Ling; Carolyn J Decker; Martin A Walsh; Meipei She; Roy Parker; Haiwei Song
Journal:  Mol Cell Biol       Date:  2008-08-04       Impact factor: 4.272

4.  New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites.

Authors:  R D Gietz; A Sugino
Journal:  Gene       Date:  1988-12-30       Impact factor: 3.688

5.  Translation initiation and ribosomal biogenesis: involvement of a putative rRNA helicase and RPL46.

Authors:  A B Sachs; R W Davis
Journal:  Science       Date:  1990-03-02       Impact factor: 47.728

6.  The DEAD box protein Dhh1 stimulates the decapping enzyme Dcp1.

Authors:  Nicole Fischer; Karsten Weis
Journal:  EMBO J       Date:  2002-06-03       Impact factor: 11.598

7.  The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes.

Authors:  J M Coller; M Tucker; U Sheth; M A Valencia-Sanchez; R Parker
Journal:  RNA       Date:  2001-12       Impact factor: 4.942

Review 8.  The control of mRNA decapping and P-body formation.

Authors:  Tobias M Franks; Jens Lykke-Andersen
Journal:  Mol Cell       Date:  2008-12-05       Impact factor: 17.970

9.  Protection of specific maternal messenger RNAs by the P body protein CGH-1 (Dhh1/RCK) during Caenorhabditis elegans oogenesis.

Authors:  Peter R Boag; Arzu Atalay; Stacey Robida; Valerie Reinke; T Keith Blackwell
Journal:  J Cell Biol       Date:  2008-08-11       Impact factor: 10.539

10.  Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae.

Authors:  Carolyn J Decker; Daniela Teixeira; Roy Parker
Journal:  J Cell Biol       Date:  2007-11-05       Impact factor: 10.539

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  124 in total

1.  The structural basis of Edc3- and Scd6-mediated activation of the Dcp1:Dcp2 mRNA decapping complex.

Authors:  Simon A Fromm; Vincent Truffault; Julia Kamenz; Joerg E Braun; Niklas A Hoffmann; Elisa Izaurralde; Remco Sprangers
Journal:  EMBO J       Date:  2011-11-15       Impact factor: 11.598

Review 2.  P-bodies and stress granules: possible roles in the control of translation and mRNA degradation.

Authors:  Carolyn J Decker; Roy Parker
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

3.  A genome-wide RNAi screen reveals that mRNA decapping restricts bunyaviral replication by limiting the pools of Dcp2-accessible targets for cap-snatching.

Authors:  Kaycie C Hopkins; Laura M McLane; Tariq Maqbool; Debasis Panda; Beth Gordesky-Gold; Sara Cherry
Journal:  Genes Dev       Date:  2013-07-01       Impact factor: 11.361

4.  The cytoplasmic mRNA degradation factor Pat1 is required for rRNA processing.

Authors:  Mridula Muppavarapu; Susanne Huch; Tracy Nissan
Journal:  RNA Biol       Date:  2016-02-26       Impact factor: 4.652

5.  The mRNA Decay Factor CAR-1/LSM14 Regulates Axon Regeneration via Mitochondrial Calcium Dynamics.

Authors:  Ngang Heok Tang; Kyung Won Kim; Suhong Xu; Stephen M Blazie; Brian A Yee; Gene W Yeo; Yishi Jin; Andrew D Chisholm
Journal:  Curr Biol       Date:  2020-01-23       Impact factor: 10.834

Review 6.  An overview of macroautophagy in yeast.

Authors:  Xin Wen; Daniel J Klionsky
Journal:  J Mol Biol       Date:  2016-02-22       Impact factor: 5.469

7.  Stm1 modulates translation after 80S formation in Saccharomyces cerevisiae.

Authors:  Vidya Balagopal; Roy Parker
Journal:  RNA       Date:  2011-04-01       Impact factor: 4.942

8.  Not4-dependent translational repression is important for cellular protein homeostasis in yeast.

Authors:  Steffen Preissler; Julia Reuther; Miriam Koch; Annika Scior; Michael Bruderek; Tancred Frickey; Elke Deuerling
Journal:  EMBO J       Date:  2015-05-13       Impact factor: 11.598

9.  The conserved P body component HPat/Pat1 negatively regulates synaptic terminal growth at the larval Drosophila neuromuscular junction.

Authors:  Sarala J Pradhan; Katherine R Nesler; Sarah F Rosen; Yasuko Kato; Akira Nakamura; Mani Ramaswami; Scott A Barbee
Journal:  J Cell Sci       Date:  2012-10-24       Impact factor: 5.285

Review 10.  The intimate relationships of mRNA decay and translation.

Authors:  Bijoyita Roy; Allan Jacobson
Journal:  Trends Genet       Date:  2013-09-30       Impact factor: 11.639

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