Literature DB >> 26908221

An overview of macroautophagy in yeast.

Xin Wen1, Daniel J Klionsky2.   

Abstract

Macroautophagy is an evolutionarily conserved dynamic pathway that functions primarily in a degradative manner. A basal level of macroautophagy occurs constitutively, but this process can be further induced in response to various types of stress including starvation, hypoxia and hormonal stimuli. The general principle behind macroautophagy is that cytoplasmic contents can be sequestered within a transient double-membrane organelle, an autophagosome, which subsequently fuses with a lysosome or vacuole (in mammals, or yeast and plants, respectively), allowing for degradation of the cargo followed by recycling of the resulting macromolecules. Through this basic mechanism, macroautophagy has a critical role in cellular homeostasis; however, either insufficient or excessive macroautophagy can seriously compromise cell physiology, and thus, it needs to be properly regulated. In fact, a wide range of diseases are associated with dysregulation of macroautophagy. There has been substantial progress in understanding the regulation and molecular mechanisms of macroautophagy in different organisms; however, many questions concerning some of the most fundamental aspects of macroautophagy remain unresolved. In this review, we summarize current knowledge about macroautophagy mainly in yeast, including the mechanism of autophagosome biogenesis, the function of the core macroautophagic machinery, the regulation of macroautophagy and the process of cargo recognition in selective macroautophagy, with the goal of providing insights into some of the key unanswered questions in this field.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  autophagosome biogenesis; autophagy; cargo recognition; regulation; stress

Mesh:

Year:  2016        PMID: 26908221      PMCID: PMC4846508          DOI: 10.1016/j.jmb.2016.02.021

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  192 in total

1.  Sequestration revisited: integrating traditional electron microscopy, de novo assembly and new results.

Authors:  Attila L Kovács; Zsolt Pálfia; Gábor Réz; Tibor Vellai; János Kovács
Journal:  Autophagy       Date:  2007-06-15       Impact factor: 16.016

2.  Mitochondrial ER contacts are crucial for mitophagy in yeast.

Authors:  Stefan Böckler; Benedikt Westermann
Journal:  Dev Cell       Date:  2014-02-13       Impact factor: 12.270

Review 3.  How to control self-digestion: transcriptional, post-transcriptional, and post-translational regulation of autophagy.

Authors:  Yuchen Feng; Zhiyuan Yao; Daniel J Klionsky
Journal:  Trends Cell Biol       Date:  2015-03-08       Impact factor: 20.808

Review 4.  Post-translationally-modified structures in the autophagy machinery: an integrative perspective.

Authors:  Hana Popelka; Daniel J Klionsky
Journal:  FEBS J       Date:  2015-07-16       Impact factor: 5.542

5.  Hierarchy of Atg proteins in pre-autophagosomal structure organization.

Authors:  Kuninori Suzuki; Yuka Kubota; Takayuki Sekito; Yoshinori Ohsumi
Journal:  Genes Cells       Date:  2007-02       Impact factor: 1.891

6.  Architecture of the Atg17 complex as a scaffold for autophagosome biogenesis.

Authors:  Michael J Ragusa; Robin E Stanley; James H Hurley
Journal:  Cell       Date:  2012-12-06       Impact factor: 41.582

Review 7.  Autophagy: mechanism and physiological relevance 'brewed' from yeast studies.

Authors:  Rodney J Devenish; Daniel J Klionsky
Journal:  Front Biosci (Schol Ed)       Date:  2012-06-01

8.  ER exit sites are physical and functional core autophagosome biogenesis components.

Authors:  Martin Graef; Jonathan R Friedman; Christopher Graham; Mohan Babu; Jodi Nunnari
Journal:  Mol Biol Cell       Date:  2013-07-31       Impact factor: 4.138

9.  Recruitment of Atg9 to the preautophagosomal structure by Atg11 is essential for selective autophagy in budding yeast.

Authors:  Congcong He; Hui Song; Tomohiro Yorimitsu; Iryna Monastyrska; Wei-Lien Yen; Julie E Legakis; Daniel J Klionsky
Journal:  J Cell Biol       Date:  2006-12-18       Impact factor: 10.539

10.  Hrr25 triggers selective autophagy-related pathways by phosphorylating receptor proteins.

Authors:  Chikara Tanaka; Li-Jing Tan; Keisuke Mochida; Hiromi Kirisako; Michiko Koizumi; Eri Asai; Machiko Sakoh-Nakatogawa; Yoshinori Ohsumi; Hitoshi Nakatogawa
Journal:  J Cell Biol       Date:  2014-10-06       Impact factor: 10.539

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  92 in total

Review 1.  Mechanistic Insights into the Role of Atg11 in Selective Autophagy.

Authors:  Katarzyna Zientara-Rytter; Suresh Subramani
Journal:  J Mol Biol       Date:  2019-06-22       Impact factor: 5.469

2.  Atg2, Atg9 and Atg18 in mitochondrial integrity, cardiac function and healthspan in Drosophila.

Authors:  Peng Xu; Deena Damschroder; Mei Zhang; Karen A Ryall; Paul N Adler; Jeffrey J Saucerman; Robert J Wessells; Zhen Yan
Journal:  J Mol Cell Cardiol       Date:  2018-12-17       Impact factor: 5.000

Review 3.  Microautophagy regulates proteasome homeostasis.

Authors:  Jianhui Li; Mark Hochstrasser
Journal:  Curr Genet       Date:  2020-02-20       Impact factor: 3.886

Review 4.  Emerging connections between RNA and autophagy.

Authors:  Lisa B Frankel; Michal Lubas; Anders H Lund
Journal:  Autophagy       Date:  2016-10-07       Impact factor: 16.016

5.  Macroautophagy occurs in distal TMV-uninfected root tip tissue of tomato taking place systemic PCD.

Authors:  Shumin Zhou; Qiang Hong; Yang Li; Qi Li; Ruisha Li; Hongli Zhang; Mao Wang; Xiaojun Yuan
Journal:  Protoplasma       Date:  2017-05-27       Impact factor: 3.356

6.  Gyp1 has a dual function as Ypt1 GAP and interaction partner of Atg8 in selective autophagy.

Authors:  Anne Lisa Mitter; Petra Schlotterhose; Roswitha Krick
Journal:  Autophagy       Date:  2019-01-27       Impact factor: 16.016

Review 7.  On the edge of degradation: Autophagy regulation by RNA decay.

Authors:  Elizabeth Delorme-Axford; Daniel J Klionsky
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-12-17       Impact factor: 9.957

Review 8.  At a glance: A history of autophagy and cancer.

Authors:  Xin Wen; Daniel J Klionsky
Journal:  Semin Cancer Biol       Date:  2019-11-07       Impact factor: 15.707

Review 9.  Whi2: a new player in amino acid sensing.

Authors:  Xinchen Teng; J Marie Hardwick
Journal:  Curr Genet       Date:  2019-01-30       Impact factor: 3.886

Review 10.  Transcriptional and post-transcriptional regulation of autophagy in the yeast Saccharomyces cerevisiae.

Authors:  Elizabeth Delorme-Axford; Daniel J Klionsky
Journal:  J Biol Chem       Date:  2018-01-25       Impact factor: 5.157

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