Literature DB >> 20817768

Complete genome sequence of the representative γ-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26.

Yuji Nagata1, Yoshiyuki Ohtsubo, Ryo Endo, Natsuko Ichikawa, Akiho Ankai, Akio Oguchi, Shigehiro Fukui, Nobuyuki Fujita, Masataka Tsuda.   

Abstract

Sphingobium japonicum strain UT26 utilizes γ-hexachlorocyclohexane (γ-HCH), a man-made chlorinated pesticide that causes serious environmental problems due to its toxicity and long persistence, as a sole source of carbon and energy. Here, we report the complete genome sequence of UT26, which consists of two chromosomes and three plasmids. The 15 lin genes involved in γ-HCH degradation are dispersed on the two chromosomes and one of the three plasmids.

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Year:  2010        PMID： 20817768      PMCID： PMC2953701          DOI： 10.1128/JB.00961-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  15 in total

1.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

2.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

3.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

4.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  Cloning and characterization of linR, involved in regulation of the downstream pathway for gamma-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26.

Authors:  Keisuke Miyauchi; Haeng-Seog Lee; Masao Fukuda; Masamichi Takagi; Yuji Nagata
Journal:  Appl Environ Microbiol       Date:  2002-04       Impact factor: 4.792

6.  Identification and characterization of genes involved in the downstream degradation pathway of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis UT26.

Authors:  Ryo Endo; Mayuko Kamakura; Keisuke Miyauchi; Masao Fukuda; Yoshiyuki Ohtsubo; Masataka Tsuda; Yuji Nagata
Journal:  J Bacteriol       Date:  2005-02       Impact factor: 3.490

7.  Biodegradation of hexachlorocyclohexane (HCH) by microorganisms.

Authors:  Theresa M Phillips; Alan G Seech; Hung Lee; Jack T Trevors
Journal:  Biodegradation       Date:  2005-08       Impact factor: 3.909

8.  Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4.

Authors:  Mitsuo Sekine; Satoshi Tanikawa; Seiha Omata; Mika Saito; Takatomo Fujisawa; Naofumi Tsukatani; Takahisa Tajima; Tomohiro Sekigawa; Hiroki Kosugi; Yasunori Matsuo; Rika Nishiko; Kohsuke Imamura; Mio Ito; Hitomi Narita; Shinichi Tago; Nobuyuki Fujita; Shigeaki Harayama
Journal:  Environ Microbiol       Date:  2006-02       Impact factor: 5.491

Review 9.  Biochemistry of microbial degradation of hexachlorocyclohexane and prospects for bioremediation.

Authors:  Rup Lal; Gunjan Pandey; Pooja Sharma; Kirti Kumari; Shweta Malhotra; Rinku Pandey; Vishakha Raina; Hans-Peter E Kohler; Christof Holliger; Colin Jackson; John G Oakeshott
Journal:  Microbiol Mol Biol Rev       Date:  2010-03       Impact factor: 11.056

10.  Isolation and characterization of Tn5-induced mutants of Pseudomonas paucimobilis UT26 defective in gamma-hexachlorocyclohexane dehydrochlorinase (LinA).

Authors:  Y Nagata; R Imai; A Sakai; M Fukuda; K Yano; M Takagi
Journal:  Biosci Biotechnol Biochem       Date:  1993-05       Impact factor: 2.043
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  26 in total

1.  Proteomic phenotyping of Novosphingobium nitrogenifigens reveals a robust capacity for simultaneous nitrogen fixation, polyhydroxyalkanoate production, and resistance to reactive oxygen species.

Authors:  Anne-Marie Smit; Timothy J Strabala; Lifeng Peng; Pisana Rawson; Gareth Lloyd-Jones; T William Jordan
Journal:  Appl Environ Microbiol       Date:  2012-05-11       Impact factor: 4.792

2.  Complete sequence and organization of the Sphingobium chungbukense DJ77 pSY2 plasmid.

Authors:  Sun-Mi Yeon; Young-Chang Kim
Journal:  J Microbiol       Date:  2011-09-02       Impact factor: 3.422

Review 3.  Whole genome strategies and bioremediation insight into dehalogenase-producing bacteria.

Authors:  Habeebat Adekilekun Oyewusi; Roswanira Abdul Wahab; Fahrul Huyop
Journal:  Mol Biol Rep       Date:  2021-03-01       Impact factor: 2.316

Review 4.  Maintenance of multipartite genome system and its functional significance in bacteria.

Authors:  Hari Sharan Misra; Ganesh Kumar Maurya; Swathi Kota; Vijaya Kumar Charaka
Journal:  J Genet       Date:  2018-09       Impact factor: 1.166

5.  Genome sequence of Sphingobium indicum B90A, a hexachlorocyclohexane-degrading bacterium.

Authors:  Shailly Anand; Naseer Sangwan; Pushp Lata; Jasvinder Kaur; Ankita Dua; Amit Kumar Singh; Mansi Verma; Jaspreet Kaur; Jitendra P Khurana; Paramjit Khurana; Saloni Mathur; Rup Lal
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

6.  Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element.

Authors:  Yoshiyuki Ohtsubo; Yoko Ishibashi; Hideaki Naganawa; Satoshi Hirokawa; Satomi Atobe; Yuji Nagata; Masataka Tsuda
Journal:  J Bacteriol       Date:  2012-06-08       Impact factor: 3.490

7.  Biodegradability of HCH in agricultural soils from Guadeloupe (French West Indies): identification of the lin genes involved in the HCH degradation pathway.

Authors:  L Laquitaine; A Durimel; L F de Alencastro; C Jean-Marius; O Gros; S Gaspard
Journal:  Environ Sci Pollut Res Int       Date:  2015-12-19       Impact factor: 4.223

8.  Structure of aryl O-demethylase offers molecular insight into a catalytic tyrosine-dependent mechanism.

Authors:  Amanda C Kohler; Matthew J L Mills; Paul D Adams; Blake A Simmons; Kenneth L Sale
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-03       Impact factor: 11.205

9.  Pentachlorophenol hydroxylase, a poorly functioning enzyme required for degradation of pentachlorophenol by Sphingobium chlorophenolicum.

Authors:  Klara Hlouchova; Johannes Rudolph; Jaana M H Pietari; Linda S Behlen; Shelley D Copley
Journal:  Biochemistry       Date:  2012-04-27       Impact factor: 3.162

10.  Three-Component O-Demethylase System Essential for Catabolism of a Lignin-Derived Biphenyl Compound in Sphingobium sp. Strain SYK-6.

Authors:  Taichi Yoshikata; Kazuya Suzuki; Naofumi Kamimura; Masahiro Namiki; Shojiro Hishiyama; Takuma Araki; Daisuke Kasai; Yuichiro Otsuka; Masaya Nakamura; Masao Fukuda; Yoshihiro Katayama; Eiji Masai
Journal:  Appl Environ Microbiol       Date:  2014-09-12       Impact factor: 4.792
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