Literature DB >> 21887656

Complete sequence and organization of the Sphingobium chungbukense DJ77 pSY2 plasmid.

Sun-Mi Yeon1, Young-Chang Kim.   

Abstract

Sphingobium chungbukense DJ77 is capable of metabolizing priority chemicals of human health concern such as polycyclic aromatic hydrocarbons (PAHs), extracellular polysaccharide (EPS), and antibiotics. Here, we report the complete DNA and genetic organization of the plasmid pSY2 from strain DJ77. A DNA sequence analysis revealed that pSY2 comprises 18,779 bp encoding 22 open reading frames (ORFs) with 59.5% G+C content. The ORFs on pSY2 were classified into DNA replication, conjugative function, transposition, plasmid stability/partition, and other functional groups (transport, fatty acid biosynthesis, stress, and growth rate regulation). Three ORFs on pSY2 were hypothetical proteins.

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Year:  2011        PMID: 21887656     DOI: 10.1007/s12275-011-1262-3

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  19 in total

1.  Polyphasic assignment of an aromatic-degrading Pseudomonas sp., strain DJ77, in the genus Sphingomonas as Sphingomonas chungbukensis sp. nov.

Authors:  S J Kim; J Chun; K S Bae; Y C Kim
Journal:  Int J Syst Evol Microbiol       Date:  2000-07       Impact factor: 2.747

2.  A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.

Authors:  Susanne M D Goldberg; Justin Johnson; Dana Busam; Tamara Feldblyum; Steve Ferriera; Robert Friedman; Aaron Halpern; Hoda Khouri; Saul A Kravitz; Federico M Lauro; Kelvin Li; Yu-Hui Rogers; Robert Strausberg; Granger Sutton; Luke Tallon; Torsten Thomas; Eli Venter; Marvin Frazier; J Craig Venter
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-13       Impact factor: 11.205

3.  Effects of DksA, GreA, and GreB on transcription initiation: insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase.

Authors:  Steven T Rutherford; Justin J Lemke; Catherine E Vrentas; Tamas Gaal; Wilma Ross; Richard L Gourse
Journal:  J Mol Biol       Date:  2006-12-12       Impact factor: 5.469

4.  Characterization and sequence analysis of the replicator region of the novel plasmid pALC1 from Paracoccus alcaliphilus.

Authors:  D Bartosik; M Witkowska; J Baj; M Wlodarczyk
Journal:  Plasmid       Date:  2001-05       Impact factor: 3.466

5.  Complete genome sequence of the representative γ-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26.

Authors:  Yuji Nagata; Yoshiyuki Ohtsubo; Ryo Endo; Natsuko Ichikawa; Akiho Ankai; Akio Oguchi; Shigehiro Fukui; Nobuyuki Fujita; Masataka Tsuda
Journal:  J Bacteriol       Date:  2010-09-03       Impact factor: 3.490

6.  Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation.

Authors:  Masaki Shintani; Hirokazu Yano; Hiroshi Habe; Toshio Omori; Hisakazu Yamane; Masataka Tsuda; Hideaki Nojiri
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

7.  Sequence analysis of the phnD gene encoding 2-hydroxymuconic semialdehyde hydrolase in Pseudomonas sp. strain DJ77.

Authors:  H J Shin; S J Kim; Y C Kim
Journal:  Biochem Biophys Res Commun       Date:  1997-03-17       Impact factor: 3.575

8.  Characterization of plasmid pSY3 in Sphingobium chungbukense DJ77.

Authors:  Sun-Mi Yeon; Young-Chang Kim
Journal:  J Microbiol       Date:  2010-02-04       Impact factor: 3.422

9.  Endogenous sphingolipid metabolites related to the growth in Sphingomonas chungbukensis.

Authors:  Munkhtsatsral Burenjargal; Youn-Sun Lee; Jae-Myung Yoo; Young-Chang Kim; Yong-Moon Lee; Seikwan Oh; Yeo-Pyo Yun; Jin-Tae Hong; Youn-Bok Chung; Dong-Chul Moon; Hwan-Soo Yoo
Journal:  Arch Pharm Res       Date:  2007-03       Impact factor: 4.946

10.  Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus.

Authors:  Yoshinao Azuma; Akira Hosoyama; Minenosuke Matsutani; Naoko Furuya; Hiroshi Horikawa; Takeshi Harada; Hideki Hirakawa; Satoru Kuhara; Kazunobu Matsushita; Nobuyuki Fujita; Mutsunori Shirai
Journal:  Nucleic Acids Res       Date:  2009-07-28       Impact factor: 16.971

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