Literature DB >> 20197499

Biochemistry of microbial degradation of hexachlorocyclohexane and prospects for bioremediation.

Rup Lal1, Gunjan Pandey, Pooja Sharma, Kirti Kumari, Shweta Malhotra, Rinku Pandey, Vishakha Raina, Hans-Peter E Kohler, Christof Holliger, Colin Jackson, John G Oakeshott.   

Abstract

Lindane, the gamma-isomer of hexachlorocyclohexane (HCH), is a potent insecticide. Purified lindane or unpurified mixtures of this and alpha-, beta-, and delta-isomers of HCH were widely used as commercial insecticides in the last half of the 20th century. Large dumps of unused HCH isomers now constitute a major hazard because of their long residence times in soil and high nontarget toxicities. The major pathway for the aerobic degradation of HCH isomers in soil is the Lin pathway, and variants of this pathway will degrade all four of the HCH isomers although only slowly. Sequence differences in the primary LinA and LinB enzymes in the pathway play a key role in determining their ability to degrade the different isomers. LinA is a dehydrochlorinase, but little is known of its biochemistry. LinB is a hydrolytic dechlorinase that has been heterologously expressed and crystallized, and there is some understanding of the sequence-structure-function relationships underlying its substrate specificity and kinetics, although there are also some significant anomalies. The kinetics of some LinB variants are reported to be slow even for their preferred isomers. It is important to develop a better understanding of the biochemistries of the LinA and LinB variants and to use that knowledge to build better variants, because field trials of some bioremediation strategies based on the Lin pathway have yielded promising results but would not yet achieve economic levels of remediation.

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Year:  2010        PMID: 20197499      PMCID: PMC2832351          DOI: 10.1128/MMBR.00029-09

Source DB:  PubMed          Journal:  Microbiol Mol Biol Rev        ISSN: 1092-2172            Impact factor:   11.056


  153 in total

1.  Degradation of beta-Hexachlorocyclohexane by Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26.

Authors:  Yuji Nagata; Zbynek Prokop; Yukari Sato; Petr Jerabek; Ashwani Kumar; Yoshiyuki Ohtsubo; Masataka Tsuda; Jirí Damborsky
Journal:  Appl Environ Microbiol       Date:  2005-04       Impact factor: 4.792

2.  Biodegradation of hexachlorocyclohexane (HCH) by microorganisms.

Authors:  Theresa M Phillips; Alan G Seech; Hung Lee; Jack T Trevors
Journal:  Biodegradation       Date:  2005-08       Impact factor: 3.909

3.  Persistent organochlorine pesticide residues in soil and surface water of northern Indo-Gangetic alluvial plains.

Authors:  Kunwar P Singh; Amrita Malik; Sarita Sinha
Journal:  Environ Monit Assess       Date:  2006-09-07       Impact factor: 2.513

4.  Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26.

Authors:  J Marek; J Vévodová; I K Smatanová; Y Nagata; L A Svensson; J Newman; M Takagi; J Damborský
Journal:  Biochemistry       Date:  2000-11-21       Impact factor: 3.162

5.  Isolation and characterization of Tn5-induced mutants of Pseudomonas paucimobilis UT26 defective in gamma-hexachlorocyclohexane dehydrochlorinase (LinA).

Authors:  Y Nagata; R Imai; A Sakai; M Fukuda; K Yano; M Takagi
Journal:  Biosci Biotechnol Biochem       Date:  1993-05       Impact factor: 2.043

6.  Isolation and characterization of a novel gamma-hexachlorocyclohexane-degrading bacterium.

Authors:  J C Thomas; F Berger; M Jacquier; D Bernillon; F Baud-Grasset; N Truffaut; P Normand; T M Vogel; P Simonet
Journal:  J Bacteriol       Date:  1996-10       Impact factor: 3.490

7.  Organochlorine insecticides and PCB residues in fat tissues of autopsied trauma victims in Israel: 1984 to 1986.

Authors:  E Ben-Michael; F Grauer; C Raphael; Z Sahm; E D Richter
Journal:  J Environ Pathol Toxicol Oncol       Date:  1999       Impact factor: 3.567

8.  Localization of HCH catabolic genes (lin genes) in Sphingobium indicum B90A.

Authors:  Shweta Malhotra; Pooja Sharma; Hansi Kumari; Ajaib Singh; Rup Lal
Journal:  Indian J Microbiol       Date:  2007-10-04       Impact factor: 2.461

9.  Genetic diversity of gamma-hexachlorocyclohexane-degrading sphingomonads isolated from a single experimental field.

Authors:  S Yamamoto; S Otsuka; Y Murakami; M Nishiyama; K Senoo
Journal:  Lett Appl Microbiol       Date:  2009-07-15       Impact factor: 2.858

Review 10.  Aerobic degradation of lindane (gamma-hexachlorocyclohexane) in bacteria and its biochemical and molecular basis.

Authors:  Yuji Nagata; Ryo Endo; Michihiro Ito; Yoshiyuki Ohtsubo; Masataka Tsuda
Journal:  Appl Microbiol Biotechnol       Date:  2007-07-19       Impact factor: 4.813

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  63 in total

Review 1.  Toxicological effects of major environmental pollutants: an overview.

Authors:  Samina Wasi; Shams Tabrez; Masood Ahmad
Journal:  Environ Monit Assess       Date:  2012-07-06       Impact factor: 2.513

Review 2.  Compound-Specific Stable Isotope Analysis: Implications in Hexachlorocyclohexane in-vitro and Field Assessment.

Authors:  Puneet Kohli; Hans H Richnow; Rup Lal
Journal:  Indian J Microbiol       Date:  2016-11-10       Impact factor: 2.461

3.  Genome sequence of Sphingobium indicum B90A, a hexachlorocyclohexane-degrading bacterium.

Authors:  Shailly Anand; Naseer Sangwan; Pushp Lata; Jasvinder Kaur; Ankita Dua; Amit Kumar Singh; Mansi Verma; Jaspreet Kaur; Jitendra P Khurana; Paramjit Khurana; Saloni Mathur; Rup Lal
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

4.  Novel LinA type 3 δ-hexachlorocyclohexane dehydrochlorinase.

Authors:  Nidhi Shrivastava; Zbynek Prokop; Ashwani Kumar
Journal:  Appl Environ Microbiol       Date:  2015-08-21       Impact factor: 4.792

5.  Complete genome sequence of the representative γ-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26.

Authors:  Yuji Nagata; Yoshiyuki Ohtsubo; Ryo Endo; Natsuko Ichikawa; Akiho Ankai; Akio Oguchi; Shigehiro Fukui; Nobuyuki Fujita; Masataka Tsuda
Journal:  J Bacteriol       Date:  2010-09-03       Impact factor: 3.490

6.  Assessment of genetic diversity and bioremediation potential of pseudomonads isolated from pesticide-contaminated artichoke farm soils.

Authors:  Wafa Hassen; Mohamed Neifar; Hanene Cherif; Mouna Mahjoubi; Yasmine Souissi; Noura Raddadi; Fabio Fava; Ameur Cherif
Journal:  3 Biotech       Date:  2018-05-19       Impact factor: 2.406

7.  Microbial and genetic ecology of tropical Vertisols under intensive chemical farming.

Authors:  Jaya Malhotra; K Aparna; Ankita Dua; Naseer Sangwan; N Trimurtulu; D L N Rao; Rup Lal
Journal:  Environ Monit Assess       Date:  2014-11-11       Impact factor: 2.513

8.  Lindane degradation by Candida VITJzN04, a newly isolated yeast strain from contaminated soil: kinetic study, enzyme analysis and biodegradation pathway.

Authors:  Jaseetha Abdul Salam; Nilanjana Das
Journal:  World J Microbiol Biotechnol       Date:  2013-11-12       Impact factor: 3.312

9.  Pesticide stress on plants negatively affects parasitoid fitness through a bypass of their phytophage hosts.

Authors:  Andries A Kampfraath; Daniel Giesen; Cornelis A M van Gestel; Cécile Le Lann
Journal:  Ecotoxicology       Date:  2017-02-10       Impact factor: 2.823

10.  Enantioselective dehydrochlorination of δ-Hexachlorocyclohexane and δ-Pentachlorocyclohexene by LinA1 and LinA2 from Sphingobium indicum B90A.

Authors:  Birgit Geueke; Milena E Miska; Thomas Poiger; Daniel Rentsch; Rup Lal; Christof Holliger; Hans-Peter E Kohler
Journal:  Appl Environ Microbiol       Date:  2013-07-19       Impact factor: 4.792

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