Literature DB >> 22843598

Genome sequence of Sphingobium indicum B90A, a hexachlorocyclohexane-degrading bacterium.

Shailly Anand1, Naseer Sangwan, Pushp Lata, Jasvinder Kaur, Ankita Dua, Amit Kumar Singh, Mansi Verma, Jaspreet Kaur, Jitendra P Khurana, Paramjit Khurana, Saloni Mathur, Rup Lal.   

Abstract

Sphingobium indicum B90A, an efficient degrader of hexachlorocyclohexane (HCH) isomers, was isolated in 1990 from sugarcane rhizosphere soil in Cuttack, India. Here we report the draft genome sequence of this bacterium, which has now become a model system for understanding the genetics, biochemistry, and physiology of HCH degradation.

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Year:  2012        PMID： 22843598      PMCID： PMC3416241          DOI： 10.1128/JB.00901-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  15 in total

1.  Degradation of Alpha-, Beta-, and Gamma-Hexachlorocyclohexane by a Soil Bacterium under Aerobic Conditions.

Authors:  S K Sahu; K K Patnaik; M Sharmila; N Sethunathan
Journal:  Appl Environ Microbiol       Date:  1990-11       Impact factor: 4.792

2.  ABySS: a parallel assembler for short read sequence data.

Authors:  Jared T Simpson; Kim Wong; Shaun D Jackman; Jacqueline E Schein; Steven J M Jones; Inanç Birol
Journal:  Genome Res       Date:  2009-02-27       Impact factor: 9.043

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Complete genome sequence of the representative γ-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26.

Authors:  Yuji Nagata; Yoshiyuki Ohtsubo; Ryo Endo; Natsuko Ichikawa; Akiho Ankai; Akio Oguchi; Shigehiro Fukui; Nobuyuki Fujita; Masataka Tsuda
Journal:  J Bacteriol       Date:  2010-09-03       Impact factor: 3.490

5.  Enantioselective transformation of alpha-hexachlorocyclohexane by the dehydrochlorinases LinA1 and LinA2 from the soil bacterium Sphingomonas paucimobilis B90A.

Authors:  Mrutyunjay Suar; Andrea Hauser; Thomas Poiger; Hans-Rudolf Buser; Markus D Müller; Charu Dogra; Vishakha Raina; Christof Holliger; Jan Roelof van der Meer; Rup Lal; Hans-Peter E Kohler
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

6.  Haloalkane dehalogenase LinB is responsible for beta- and delta-hexachlorocyclohexane transformation in Sphingobium indicum B90A.

Authors:  Poonam Sharma; Vishakha Raina; Rekha Kumari; Shweta Malhotra; Charu Dogra; Hansi Kumari; Hans-Peter E Kohler; Hans-Rudolf Buser; Christof Holliger; Rup Lal
Journal:  Appl Environ Microbiol       Date:  2006-09       Impact factor: 4.792

7.  Enhanced biodegradation of hexachlorocyclohexane (HCH) in contaminated soils via inoculation with Sphingobium indicum B90A.

Authors:  Vishakha Raina; Mrutyunjay Suar; Ajaib Singh; Om Prakash; Mandeep Dadhwal; Sanjay Kumar Gupta; Charu Dogra; Kirsten Lawlor; Sukanya Lal; Jan Roelof van der Meer; Christof Holliger; Rup Lal
Journal:  Biodegradation       Date:  2007-03-27       Impact factor: 3.909

8.  Cloning and characterization of lin genes responsible for the degradation of Hexachlorocyclohexane isomers by Sphingomonas paucimobilis strain B90.

Authors:  Rekha Kumari; Sanjukta Subudhi; Mrutyunjay Suar; Gauri Dhingra; Vishakha Raina; Charu Dogra; Sukanya Lal; Jan Roelof van der Meer; Christof Holliger; Rup Lal
Journal:  Appl Environ Microbiol       Date:  2002-12       Impact factor: 4.792

9.  Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: evidence for horizontal gene transfer.

Authors:  Charu Dogra; Vishakha Raina; Rinku Pal; Mrutyunjay Suar; Sukanya Lal; Karl-Heinz Gartemann; Christof Holliger; Jan Roelof van der Meer; Rup Lal
Journal:  J Bacteriol       Date:  2004-04       Impact factor: 3.490

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  18 in total

Review 1.  Compound-Specific Stable Isotope Analysis: Implications in Hexachlorocyclohexane in-vitro and Field Assessment.

Authors:  Puneet Kohli; Hans H Richnow; Rup Lal
Journal:  Indian J Microbiol       Date:  2016-11-10       Impact factor: 2.461

2.  Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.

Authors:  Frank O Aylward; Bradon R McDonald; Sandra M Adams; Alejandra Valenzuela; Rebeccah A Schmidt; Lynne A Goodwin; Tanja Woyke; Cameron R Currie; Garret Suen; Michael Poulsen
Journal:  Appl Environ Microbiol       Date:  2013-04-05       Impact factor: 4.792

3.  Pan-genome dynamics of Pseudomonas gene complements enriched across hexachlorocyclohexane dumpsite.

Authors:  Anukriti Sharma; Naseer Sangwan; Vivek Negi; Puneet Kohli; Jitendra Paul Khurana; Desiraju Lakshmi Narsimha Rao; Rup Lal
Journal:  BMC Genomics       Date:  2015-04-18       Impact factor: 3.969

4.  Draft Genome Sequence of Sphingobium lactosutens Strain DS20T, Isolated from a Hexachlorocyclohexane Dumpsite.

Authors:  Roshan Kumar; Vatsala Dwivedi; Vivek Negi; J P Khurana; Rup Lal
Journal:  Genome Announc       Date:  2013-09-19

5.  Draft Genome Sequence of Sphingobium chinhatense Strain IP26T, Isolated from a Hexachlorocyclohexane Dumpsite.

Authors:  Neha Niharika; Naseer Sangwan; Salar Ahmad; Priya Singh; J P Khurana; Rup Lal
Journal:  Genome Announc       Date:  2013-08-29

6.  Draft Genome Sequence of Sphingobium quisquiliarum Strain P25T, a Novel Hexachlorocyclohexane (HCH)-Degrading Bacterium Isolated from an HCH Dumpsite.

Authors:  Amit Kumar Singh; Naseer Sangwan; Anukriti Sharma; Vipin Gupta; J P Khurana; Rup Lal
Journal:  Genome Announc       Date:  2013-09-12

7.  Genome Sequence of Novosphingobium lindaniclasticum LE124T, Isolated from a Hexachlorocyclohexane Dumpsite.

Authors:  Anjali Saxena; Namita Nayyar; Naseer Sangwan; Rashmi Kumari; J P Khurana; Rup Lal
Journal:  Genome Announc       Date:  2013-09-12

8.  Draft Genome Sequence of Sphingobium sp. Strain HDIPO4, an Avid Degrader of Hexachlorocyclohexane.

Authors:  Udita Mukherjee; Roshan Kumar; Nitish Kumar Mahato; J P Khurana; Rup Lal
Journal:  Genome Announc       Date:  2013-09-19

9.  Draft Genome Sequence of a Hexachlorocyclohexane-Degrading Bacterium, Sphingobium baderi Strain LL03T.

Authors:  Jasvinder Kaur; Helianthous Verma; Charu Tripathi; J P Khurana; Rup Lal
Journal:  Genome Announc       Date:  2013-09-19

10.  Draft Genome Sequence of Sphingobium sp. Strain BHC-A, Revealing Genes for the Degradation of Hexachlorocyclohexane.

Authors:  Chao Xue; Li Cao; Rong Zhang; Jian He; Shunpeng Li; Qing Hong
Journal:  Genome Announc       Date:  2014-04-03
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