Literature DB >> 20817052

BoneJ: Free and extensible bone image analysis in ImageJ.

Michael Doube1, Michał M Kłosowski, Ignacio Arganda-Carreras, Fabrice P Cordelières, Robert P Dougherty, Jonathan S Jackson, Benjamin Schmid, John R Hutchinson, Sandra J Shefelbine.   

Abstract

Bone geometry is commonly measured on computed tomographic (CT) and X-ray microtomographic (μCT) images. We obtained hundreds of CT, μCT and synchrotron μCT images of bones from diverse species that needed to be analysed remote from scanning hardware, but found that available software solutions were expensive, inflexible or methodologically opaque. We implemented standard bone measurements in a novel ImageJ plugin, BoneJ, with which we analysed trabecular bone, whole bones and osteocyte lacunae. BoneJ is open source and free for anyone to download, use, modify and distribute.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID： 20817052      PMCID： PMC3193171          DOI： 10.1016/j.bone.2010.08.023

Source DB:  PubMed          Journal:  Bone        ISSN： 1873-2763            Impact factor:   4.398


  17 in total

1.  Quantification of Bone Microarchitecture with the Structure Model Index.

Authors:  TOR Hildebrand; PETER Rüegsegger
Journal:  Comput Methods Biomech Biomed Engin       Date:  1997       Impact factor: 1.763

2.  Parallel plate model for trabecular bone exhibits volume fraction-dependent bias.

Authors:  J S Day; M Ding; A Odgaard; D R Sumner; I Hvid; H Weinans
Journal:  Bone       Date:  2000-11       Impact factor: 4.398

3.  3D reconstruction of histological sections: Application to mammary gland tissue.

Authors:  Ignacio Arganda-Carreras; Rodrigo Fernández-González; Arrate Muñoz-Barrutia; Carlos Ortiz-De-Solorzano
Journal:  Microsc Res Tech       Date:  2010-10       Impact factor: 2.769

Review 4.  Whole bone geometry and bone quality in distal forearm fracture.

Authors:  Ian H Parkinson; Nicola L Fazzalari
Journal:  J Orthop Trauma       Date:  2008-09       Impact factor: 2.512

5.  Classification of trabeculae into three-dimensional rodlike and platelike structures via local inertial anisotropy.

Authors:  Branimir Vasilić; Chamith S Rajapakse; Felix W Wehrli
Journal:  Med Phys       Date:  2009-07       Impact factor: 4.071

Review 6.  New approaches to structural evolution of limb bones in primates.

Authors:  C B Ruff
Journal:  Folia Primatol (Basel)       Date:  1989       Impact factor: 1.246

7.  Bone histomorphometry: standardization of nomenclature, symbols, and units. Report of the ASBMR Histomorphometry Nomenclature Committee.

Authors:  A M Parfitt; M K Drezner; F H Glorieux; J A Kanis; H Malluche; P J Meunier; S M Ott; R R Recker
Journal:  J Bone Miner Res       Date:  1987-12       Impact factor: 6.741

Review 8.  Dinosaur biomechanics.

Authors:  R McNeill Alexander
Journal:  Proc Biol Sci       Date:  2006-08-07       Impact factor: 5.349

9.  Biomechanical allometry in hominoid thoracic vertebrae.

Authors:  C J Hernandez; D A Loomis; M M Cotter; A L Schifle; L C Anderson; L Elsmore; C Kunos; B Latimer
Journal:  J Hum Evol       Date:  2009-05-08       Impact factor: 3.895

10.  Three-dimensional geometric analysis of felid limb bone allometry.

Authors:  Michael Doube; Alexis Wiktorowicz-Conroy; Alexis Wiktorowicz Conroy; Per Christiansen; John R Hutchinson; Sandra Shefelbine
Journal:  PLoS One       Date:  2009-03-09       Impact factor: 3.240
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  427 in total

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Journal:  J Exp Biol       Date:  2015-07-31       Impact factor: 3.312

2.  Effect of bone sialoprotein coating on progression of bone formation in a femoral defect model in rats.

Authors:  Anja Klein; Andreas Baranowski; Ulrike Ritz; Christiane Mack; Hermann Götz; Eva Langendorf; Bilal Al-Nawas; Philipp Drees; Pol M Rommens; Alexander Hofmann
Journal:  Eur J Trauma Emerg Surg       Date:  2019-05-28       Impact factor: 3.693

3.  Modelling the mechanics of partially mineralized collagen fibrils, fibres and tissue.

Authors:  Yanxin Liu; Stavros Thomopoulos; Changqing Chen; Victor Birman; Markus J Buehler; Guy M Genin
Journal:  J R Soc Interface       Date:  2013-12-18       Impact factor: 4.118

4.  Altered bone development in a mouse model of peripheral sensory nerve inactivation.

Authors:  M A Heffner; M J Anderson; G C Yeh; D C Genetos; B A Christiansen
Journal:  J Musculoskelet Neuronal Interact       Date:  2014-03       Impact factor: 2.041

5.  Reduced gravitational loading does not account for the skeletal effect of botulinum toxin-induced muscle inhibition suggesting a direct effect of muscle on bone.

Authors:  Stuart J Warden; Matthew R Galley; Jeffrey S Richard; Lydia A George; Rachel C Dirks; Elizabeth A Guildenbecher; Ashley M Judd; Alexander G Robling; Robyn K Fuchs
Journal:  Bone       Date:  2013-02-04       Impact factor: 4.398

6.  Low-carbohydrate, high-fat diets have sex-specific effects on bone health in rats.

Authors:  Ayse Zengin; Benedikt Kropp; Yan Chevalier; Riia Junnila; Elahu Sustarsic; Nadja Herbach; Flaminia Fanelli; Marco Mezzullo; Stefan Milz; Martin Bidlingmaier; Maximilian Bielohuby
Journal:  Eur J Nutr       Date:  2015-09-19       Impact factor: 5.614

7.  Fracture healing in mice lacking Pten in osteoblasts: a micro-computed tomography image-based analysis of the mechanical properties of the femur.

Authors:  Caitlyn J Collins; Juan F Vivanco; Scott A Sokn; Bart O Williams; Travis A Burgers; Heidi-Lynn Ploeg
Journal:  J Biomech       Date:  2014-11-28       Impact factor: 2.712

8.  CBCT-based bone quality assessment in decompression of large odontogenic cystic lesions.

Authors:  Ling Gao; Wenhao Ren; Shaoming Li; Jingjing Zheng; Lingfa Xue; Yaoxiang Xu; Qibo Wang; Jianzhong Song; Zhichao Dou; Minzhan Zhou; Wenlin Xiao; Keqian Zhi
Journal:  Oral Radiol       Date:  2018-02-14       Impact factor: 1.852

9.  Longitudinal Effects of Single Hindlimb Radiation Therapy on Bone Strength and Morphology at Local and Contralateral Sites.

Authors:  Megan E Oest; Connor G Policastro; Kenneth A Mann; Nicholas D Zimmerman; Timothy A Damron
Journal:  J Bone Miner Res       Date:  2017-10-04       Impact factor: 6.741

10.  Use of dual-energy computed tomography to measure skeletal-wide marrow composition and cancellous bone mineral density.

Authors:  Luke Arentsen; Karen E Hansen; Masashi Yagi; Yutaka Takahashi; Ryan Shanley; Angela McArthur; Patrick Bolan; Taiki Magome; Douglas Yee; Jerry Froelich; Susanta K Hui
Journal:  J Bone Miner Metab       Date:  2016-12-09       Impact factor: 2.626
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