Literature DB >> 22162918

Accounting for network effects in neuronal responses using L1 regularized point process models.

Ryan C Kelly1, Robert E Kass, Matthew A Smith, Tai Sing Lee.   

Abstract

Activity of a neuron, even in the early sensory areas, is not simply a function of its local receptive field or tuning properties, but depends on global context of the stimulus, as well as the neural context. This suggests the activity of the surrounding neurons and global brain states can exert considerable influence on the activity of a neuron. In this paper we implemented an L1 regularized point process model to assess the contribution of multiple factors to the firing rate of many individual units recorded simultaneously from V1 with a 96-electrode "Utah" array. We found that the spikes of surrounding neurons indeed provide strong predictions of a neuron's response, in addition to the neuron's receptive field transfer function. We also found that the same spikes could be accounted for with the local field potentials, a surrogate measure of global network states. This work shows that accounting for network fluctuations can improve estimates of single trial firing rate and stimulus-response transfer functions.

Entities:  

Year:  2010        PMID: 22162918      PMCID: PMC3235005     

Source DB:  PubMed          Journal:  Adv Neural Inf Process Syst        ISSN: 1049-5258


  18 in total

1.  Robust, automatic spike sorting using mixtures of multivariate t-distributions.

Authors:  Shy Shoham; Matthew R Fellows; Richard A Normann
Journal:  J Neurosci Methods       Date:  2003-08-15       Impact factor: 2.390

2.  Sequential structure of neocortical spontaneous activity in vivo.

Authors:  Artur Luczak; Peter Barthó; Stephan L Marguet; György Buzsáki; Kenneth D Harris
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-21       Impact factor: 11.205

3.  Comparison of recordings from microelectrode arrays and single electrodes in the visual cortex.

Authors:  Ryan C Kelly; Matthew A Smith; Jason M Samonds; Adam Kohn; A B Bonds; J Anthony Movshon; Tai Sing Lee
Journal:  J Neurosci       Date:  2007-01-10       Impact factor: 6.167

Review 4.  Neuronal computations with stochastic network states.

Authors:  Alain Destexhe; Diego Contreras
Journal:  Science       Date:  2006-10-06       Impact factor: 47.728

5.  Electrophysiological correlates of the brain's intrinsic large-scale functional architecture.

Authors:  Biyu J He; Abraham Z Snyder; John M Zempel; Matthew D Smyth; Marcus E Raichle
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-08       Impact factor: 11.205

6.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

Authors:  Jerome Friedman; Trevor Hastie; Rob Tibshirani
Journal:  J Stat Softw       Date:  2010       Impact factor: 6.440

7.  Spatial and temporal scales of neuronal correlation in primary visual cortex.

Authors:  Matthew A Smith; Adam Kohn
Journal:  J Neurosci       Date:  2008-11-26       Impact factor: 6.167

8.  Spatio-temporal correlations and visual signalling in a complete neuronal population.

Authors:  Jonathan W Pillow; Jonathon Shlens; Liam Paninski; Alexander Sher; Alan M Litke; E J Chichilnisky; Eero P Simoncelli
Journal:  Nature       Date:  2008-07-23       Impact factor: 49.962

9.  Stimulus contrast modulates functional connectivity in visual cortex.

Authors:  Ian Nauhaus; Laura Busse; Matteo Carandini; Dario L Ringach
Journal:  Nat Neurosci       Date:  2008-11-23       Impact factor: 24.884

10.  Interhemispheric correlations of slow spontaneous neuronal fluctuations revealed in human sensory cortex.

Authors:  Yuval Nir; Roy Mukamel; Ilan Dinstein; Eran Privman; Michal Harel; Lior Fisch; Hagar Gelbard-Sagiv; Svetlana Kipervasser; Fani Andelman; Miri Y Neufeld; Uri Kramer; Amos Arieli; Itzhak Fried; Rafael Malach
Journal:  Nat Neurosci       Date:  2008-09       Impact factor: 24.884

View more
  8 in total

1.  An L₁-regularized logistic model for detecting short-term neuronal interactions.

Authors:  Mengyuan Zhao; Aaron Batista; John P Cunningham; Cynthia Chestek; Zuley Rivera-Alvidrez; Rachel Kalmar; Stephen Ryu; Krishna Shenoy; Satish Iyengar
Journal:  J Comput Neurosci       Date:  2011-10-22       Impact factor: 1.621

2.  A Bayesian compressed-sensing approach for reconstructing neural connectivity from subsampled anatomical data.

Authors:  Yuriy Mishchenko; Liam Paninski
Journal:  J Comput Neurosci       Date:  2012-03-22       Impact factor: 1.621

3.  Dynamics of visual receptive fields in the macaque frontal eye field.

Authors:  J Patrick Mayo; Amie R DiTomasso; Marc A Sommer; Matthew A Smith
Journal:  J Neurophysiol       Date:  2015-09-16       Impact factor: 2.714

4.  Copula regression analysis of simultaneously recorded frontal eye field and inferotemporal spiking activity during object-based working memory.

Authors:  Meng Hu; Kelsey L Clark; Xiajing Gong; Behrad Noudoost; Mingyao Li; Tirin Moore; Hualou Liang
Journal:  J Neurosci       Date:  2015-06-10       Impact factor: 6.167

5.  A framework for evaluating pairwise and multiway synchrony among stimulus-driven neurons.

Authors:  Ryan C Kelly; Robert E Kass
Journal:  Neural Comput       Date:  2012-04-17       Impact factor: 2.026

6.  Identification of sparse neural functional connectivity using penalized likelihood estimation and basis functions.

Authors:  Dong Song; Haonan Wang; Catherine Y Tu; Vasilis Z Marmarelis; Robert E Hampson; Sam A Deadwyler; Theodore W Berger
Journal:  J Comput Neurosci       Date:  2013-05-15       Impact factor: 1.621

7.  Establishing a Statistical Link between Network Oscillations and Neural Synchrony.

Authors:  Pengcheng Zhou; Shawn D Burton; Adam C Snyder; Matthew A Smith; Nathaniel N Urban; Robert E Kass
Journal:  PLoS Comput Biol       Date:  2015-10-14       Impact factor: 4.475

8.  Complexity and diversity in sparse code priors improve receptive field characterization of Macaque V1 neurons.

Authors:  Ziniu Wu; Harold Rockwell; Yimeng Zhang; Shiming Tang; Tai Sing Lee
Journal:  PLoS Comput Biol       Date:  2021-10-25       Impact factor: 4.475

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.