Literature DB >> 20739293

Expanding role of the jumonji C domain as an RNA hydroxylase.

Akiko Noma1, Ryuichiro Ishitani, Megumi Kato, Asuteka Nagao, Osamu Nureki, Tsutomu Suzuki.   

Abstract

JmjC (Jumonji C) domain-containing proteins are known to be an extensive family of Fe(II)/2-oxoglutarate-dependent oxygenases involved in epigenetic regulation of gene expression by catalyzing oxidative demethylation of methylated histones. We report here that a human JmjC protein named Tyw5p (TYW5) unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxywybutosine, in tRNA(Phe) by catalyzing hydroxylation. The finding provides an insight into the expanding role of JmjC protein as an RNA hydroxylase.

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Year:  2010        PMID： 20739293      PMCID： PMC2966065          DOI： 10.1074/jbc.M110.156398

Source DB:  PubMed          Journal:  J Biol Chem        ISSN： 0021-9258            Impact factor:   5.157


  22 in total

1.  Structure of the fluorescent nucleoside of yeast phenylalanine transfer ribonucleic acid.

Authors:  S H Blobstein; R Gebert; D Grunberger; K Nakanishi; I B Weinstein
Journal:  Arch Biochem Biophys       Date:  1975-04       Impact factor: 4.013

2.  Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA.

Authors:  Akiko Noma; Yohei Kirino; Yoshiho Ikeuchi; Tsutomu Suzuki
Journal:  EMBO J       Date:  2006-04-27       Impact factor: 11.598

3.  A novel methyltransferase required for the formation of the hypermodified nucleoside wybutosine in eucaryotic tRNA.

Authors:  Hamid R Kalhor; Mahmud Penjwini; Steven Clarke
Journal:  Biochem Biophys Res Commun       Date:  2005-08-26       Impact factor: 3.575

4.  Isolation and structure determination of the fluorescent base from bovine liver phenylalanine transfer ribonucleic acid.

Authors:  S H Blobstein; D Grunberger; I B Weinstein; K Nakanishi
Journal:  Biochemistry       Date:  1973-01-16       Impact factor: 3.162

5.  Isolation of hydroxy-Y base from rat liver tRNAPhe.

Authors:  H Kasai; Z Yamaizumi; Y Kuchino; S Nishimura
Journal:  Nucleic Acids Res       Date:  1979-03       Impact factor: 16.971

6.  Structure of the "peroxy-Y base" from liver tRNA Phe .

Authors:  K Nakanishi; S Blobstein; M Funamizu; N Furutachi; G Van Lear; D Grunberger; K W Lanks; I B Weinstein
Journal:  Nat New Biol       Date:  1971-11-24

7.  Discovery of a gene family critical to wyosine base formation in a subset of phenylalanine-specific transfer RNAs.

Authors:  William F Waas; Valérie de Crécy-Lagard; Paul Schimmel
Journal:  J Biol Chem       Date:  2005-09-13       Impact factor: 5.157

Review 8.  Roles of jumonji and jumonji family genes in chromatin regulation and development.

Authors:  Takashi Takeuchi; Yutaka Watanabe; Toshiyuki Takano-Shimizu; Shunzo Kondo
Journal:  Dev Dyn       Date:  2006-09       Impact factor: 3.780

9.  FIH-1 is an asparaginyl hydroxylase enzyme that regulates the transcriptional activity of hypoxia-inducible factor.

Authors:  David Lando; Daniel J Peet; Jeffrey J Gorman; Dean A Whelan; Murray L Whitelaw; Richard K Bruick
Journal:  Genes Dev       Date:  2002-06-15       Impact factor: 11.361

10.  Origin and evolution of peptide-modifying dioxygenases and identification of the wybutosine hydroxylase/hydroperoxidase.

Authors:  Lakshminarayan M Iyer; Saraswathi Abhiman; Robson F de Souza; L Aravind
Journal:  Nucleic Acids Res       Date:  2010-04-27       Impact factor: 16.971
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  37 in total

Review 1.  Hydroxylation and translational adaptation to stress: some answers lie beyond the STOP codon.

Authors:  M J Katz; L Gándara; A L De Lella Ezcurra; P Wappner
Journal:  Cell Mol Life Sci       Date:  2016-02-13       Impact factor: 9.261

2.  Cellular dynamics of RNA modification.

Authors:  Chengqi Yi; Tao Pan
Journal:  Acc Chem Res       Date:  2011-05-26       Impact factor: 22.384

Review 3.  The small members of the JMJD protein family: Enzymatic jewels or jinxes?

Authors:  Sangphil Oh; Sook Shin; Ralf Janknecht
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2019-04-26       Impact factor: 10.680

4.  TYW1: A Radical SAM Enzyme Involved in the Biosynthesis of Wybutosine Bases.

Authors:  Anthony P Young; Vahe Bandarian
Journal:  Methods Enzymol       Date:  2018-06-06       Impact factor: 1.600

Review 5.  Radical SAM enzymes involved in the biosynthesis of purine-based natural products.

Authors:  Vahe Bandarian
Journal:  Biochim Biophys Acta       Date:  2012-08-03

Review 6.  Wybutosine biosynthesis: structural and mechanistic overview.

Authors:  Phanélie Perche-Letuvée; Thibaut Molle; Farhad Forouhar; Etienne Mulliez; Mohamed Atta
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

7.  Hydroxylation of the eukaryotic ribosomal decoding center affects translational accuracy.

Authors:  Christoph Loenarz; Rok Sekirnik; Armin Thalhammer; Wei Ge; Ekaterina Spivakovsky; Mukram M Mackeen; Michael A McDonough; Matthew E Cockman; Benedikt M Kessler; Peter J Ratcliffe; Alexander Wolf; Christopher J Schofield
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

Review 8.  Growing with the wind. Ribosomal protein hydroxylation and cell growth.

Authors:  Maximiliano J Katz; Julieta M Acevedo; Pablo Wappner
Journal:  Fly (Austin)       Date:  2014-10-31       Impact factor: 2.160

9.  Crystal structure and functional analysis of JMJD5 indicate an alternate specificity and function.

Authors:  Paul A Del Rizzo; Swathi Krishnan; Raymond C Trievel
Journal:  Mol Cell Biol       Date:  2012-07-30       Impact factor: 4.272

10.  Oxygenase-catalyzed ribosome hydroxylation occurs in prokaryotes and humans.

Authors:  Wei Ge; Alexander Wolf; Tianshu Feng; Chia-Hua Ho; Rok Sekirnik; Adam Zayer; Peter J Ratcliffe; Gail M Preston; Mathew L Coleman; Christopher J Schofield; Nicolas Granatino; Matthew E Cockman; Christoph Loenarz; Nikita D Loik; Adam P Hardy; Timothy D W Claridge; Refaat B Hamed; Rasheduzzaman Chowdhury; Lingzhi Gong; Carol V Robinson; David C Trudgian; Miao Jiang; Mukram M Mackeen; James S Mccullagh; Yuliya Gordiyenko; Armin Thalhammer; Atsushi Yamamoto; Ming Yang; Phebee Liu-Yi; Zhihong Zhang; Marion Schmidt-Zachmann; Benedikt M Kessler
Journal:  Nat Chem Biol       Date:  2012-10-28       Impact factor: 15.040
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