Literature DB >> 23103944

Oxygenase-catalyzed ribosome hydroxylation occurs in prokaryotes and humans.

Wei Ge1, Alexander Wolf1, Tianshu Feng2, Chia-Hua Ho1, Rok Sekirnik1, Adam Zayer2, Peter J Ratcliffe2, Gail M Preston3, Mathew L Coleman2, Christopher J Schofield1, Nicolas Granatino1, Matthew E Cockman2, Christoph Loenarz1, Nikita D Loik1, Adam P Hardy1, Timothy D W Claridge1, Refaat B Hamed1, Rasheduzzaman Chowdhury1, Lingzhi Gong1, Carol V Robinson1, David C Trudgian4, Miao Jiang1, Mukram M Mackeen1, James S Mccullagh1, Yuliya Gordiyenko1, Armin Thalhammer1, Atsushi Yamamoto2, Ming Yang2, Phebee Liu-Yi2, Zhihong Zhang1, Marion Schmidt-Zachmann5, Benedikt M Kessler2.   

Abstract

The finding that oxygenase-catalyzed protein hydroxylation regulates animal transcription raises questions as to whether the translation machinery and prokaryotic proteins are analogously modified. Escherichia coli ycfD is a growth-regulating 2-oxoglutarate oxygenase catalyzing arginyl hydroxylation of the ribosomal protein Rpl16. Human ycfD homologs, Myc-induced nuclear antigen (MINA53) and NO66, are also linked to growth and catalyze histidyl hydroxylation of Rpl27a and Rpl8, respectively. This work reveals new therapeutic possibilities via oxygenase inhibition and by targeting modified over unmodified ribosomes.

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Year:  2012        PMID: 23103944      PMCID: PMC4972389          DOI: 10.1038/nchembio.1093

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  24 in total

1.  NO66, a highly conserved dual location protein in the nucleolus and in a special type of synchronously replicating chromatin.

Authors:  Jens Eilbracht; Michaela Reichenzeller; Michaela Hergt; Martina Schnölzer; Hans Heid; Michael Stöhr; Werner W Franke; Marion S Schmidt-Zachmann
Journal:  Mol Biol Cell       Date:  2004-01-23       Impact factor: 4.138

2.  JmjC-domain-containing proteins and histone demethylation.

Authors:  Robert J Klose; Eric M Kallin; Yi Zhang
Journal:  Nat Rev Genet       Date:  2006-09       Impact factor: 53.242

Review 3.  Ribosome biogenesis and the translation process in Escherichia coli.

Authors:  Magdalena Kaczanowska; Monica Rydén-Aulin
Journal:  Microbiol Mol Biol Rev       Date:  2007-09       Impact factor: 11.056

4.  Identification of Myc-associated protein with JmjC domain as a novel therapeutic target oncogene for lung cancer.

Authors:  Chie Suzuki; Koji Takahashi; Satoshi Hayama; Nobuhisa Ishikawa; Tatsuya Kato; Tomoo Ito; Eiju Tsuchiya; Yusuke Nakamura; Yataro Daigo
Journal:  Mol Cancer Ther       Date:  2007-02       Impact factor: 6.261

5.  The Human mineral dust-induced gene, mdig, is a cell growth regulating gene associated with lung cancer.

Authors:  Yadong Zhang; Yongju Lu; Bao-Zhu Yuan; Vince Castranova; Xianglin Shi; John L Stauffer; Laurence M Demers; Fei Chen
Journal:  Oncogene       Date:  2005-07-21       Impact factor: 9.867

Review 6.  Oxygen sensing by metazoans: the central role of the HIF hydroxylase pathway.

Authors:  William G Kaelin; Peter J Ratcliffe
Journal:  Mol Cell       Date:  2008-05-23       Impact factor: 17.970

Review 7.  FeII/alpha-ketoglutarate-dependent hydroxylases and related enzymes.

Authors:  Robert P Hausinger
Journal:  Crit Rev Biochem Mol Biol       Date:  2004 Jan-Feb       Impact factor: 8.250

8.  Lung cancer-associated JmjC domain protein mdig suppresses formation of tri-methyl lysine 9 of histone H3.

Authors:  Yongju Lu; Qingshan Chang; Yadong Zhang; Kevin Beezhold; Yon Rojanasakul; Hongwen Zhao; Vince Castranova; Xianglin Shi; Fei Chen
Journal:  Cell Cycle       Date:  2009-07-05       Impact factor: 4.534

9.  Jmjd6 catalyses lysyl-hydroxylation of U2AF65, a protein associated with RNA splicing.

Authors:  Celia J Webby; Alexander Wolf; Natalia Gromak; Mathias Dreger; Holger Kramer; Benedikt Kessler; Michael L Nielsen; Corinna Schmitz; Danica S Butler; John R Yates; Claire M Delahunty; Phillip Hahn; Andreas Lengeling; Matthias Mann; Nicholas J Proudfoot; Christopher J Schofield; Angelika Böttger
Journal:  Science       Date:  2009-07-03       Impact factor: 47.728

10.  Origin and evolution of peptide-modifying dioxygenases and identification of the wybutosine hydroxylase/hydroperoxidase.

Authors:  Lakshminarayan M Iyer; Saraswathi Abhiman; Robson F de Souza; L Aravind
Journal:  Nucleic Acids Res       Date:  2010-04-27       Impact factor: 16.971

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  74 in total

Review 1.  Hydroxylation and translational adaptation to stress: some answers lie beyond the STOP codon.

Authors:  M J Katz; L Gándara; A L De Lella Ezcurra; P Wappner
Journal:  Cell Mol Life Sci       Date:  2016-02-13       Impact factor: 9.261

2.  Cloning and heterologous expression of the thioviridamide biosynthesis gene cluster from Streptomyces olivoviridis.

Authors:  Masumi Izawa; Takashi Kawasaki; Yoichi Hayakawa
Journal:  Appl Environ Microbiol       Date:  2013-08-30       Impact factor: 4.792

Review 3.  The small members of the JMJD protein family: Enzymatic jewels or jinxes?

Authors:  Sangphil Oh; Sook Shin; Ralf Janknecht
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2019-04-26       Impact factor: 10.680

Review 4.  Inhibitors of Protein Methyltransferases and Demethylases.

Authors:  H Ümit Kaniskan; Michael L Martini; Jian Jin
Journal:  Chem Rev       Date:  2017-03-24       Impact factor: 60.622

Review 5.  New Insights into Protein Hydroxylation and Its Important Role in Human Diseases.

Authors:  Giada Zurlo; Jianping Guo; Mamoru Takada; Wenyi Wei; Qing Zhang
Journal:  Biochim Biophys Acta       Date:  2016-09-20

6.  Sudestada1, a Drosophila ribosomal prolyl-hydroxylase required for mRNA translation, cell homeostasis, and organ growth.

Authors:  Maximiliano J Katz; Julieta M Acevedo; Christoph Loenarz; Diego Galagovsky; Phebee Liu-Yi; Marcelo Pérez-Pepe; Armin Thalhammer; Rok Sekirnik; Wei Ge; Mariana Melani; María G Thomas; Sergio Simonetta; Graciela L Boccaccio; Christopher J Schofield; Matthew E Cockman; Peter J Ratcliffe; Pablo Wappner
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

7.  RNA Polymerase 1 Is Transiently Regulated by Seizures and Plays a Role in a Pharmacological Kindling Model of Epilepsy.

Authors:  Aruna Vashishta; Lukasz P Slomnicki; Maciej Pietrzak; Scott C Smith; Murali Kolikonda; Shivani P Naik; Rosanna Parlato; Michal Hetman
Journal:  Mol Neurobiol       Date:  2018-03-15       Impact factor: 5.590

8.  Hydroxylation of the eukaryotic ribosomal decoding center affects translational accuracy.

Authors:  Christoph Loenarz; Rok Sekirnik; Armin Thalhammer; Wei Ge; Ekaterina Spivakovsky; Mukram M Mackeen; Michael A McDonough; Matthew E Cockman; Benedikt M Kessler; Peter J Ratcliffe; Alexander Wolf; Christopher J Schofield
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

Review 9.  Growing with the wind. Ribosomal protein hydroxylation and cell growth.

Authors:  Maximiliano J Katz; Julieta M Acevedo; Pablo Wappner
Journal:  Fly (Austin)       Date:  2014-10-31       Impact factor: 2.160

10.  Carcinogenic metalloid arsenic induces expression of mdig oncogene through JNK and STAT3 activation.

Authors:  Jiaying Sun; Miaomiao Yu; Yongju Lu; Chitra Thakur; Bailing Chen; Ping Qiu; Hongwen Zhao; Fei Chen
Journal:  Cancer Lett       Date:  2014-01-14       Impact factor: 8.679

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