Literature DB >> 440976

Isolation of hydroxy-Y base from rat liver tRNAPhe.

H Kasai, Z Yamaizumi, Y Kuchino, S Nishimura.   

Abstract

A Y-base derivative was isolated from rat liver tRNAPhe and its structure was assigned to be alpha-(carboxyamino)-beta-hydroxy-4,9-dihydro-4,6-dimethyl-9-oxo-1H-imidazol[1,2-a]purine-7-butyric acid dimethyl ester (hydroxy-Y), based on the results of mass spectrometry and chemical degradation. This modified base seems to be the major fluorescent component of rat liver tRNAPhe; the peroxy-Y base previously isolated from rat liver tRNAPhe and characterized by Nakanishi and his coworkers (1,2) was not present in our preparation.

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Year:  1979        PMID： 440976      PMCID： PMC327747          DOI： 10.1093/nar/6.3.993

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  8 in total

1.  Tumour-specific phenylalanine tRNA contains two supernumerary methylated bases.

Authors:  Y Kuchino; E Borek
Journal:  Nature       Date:  1978-01-12       Impact factor: 49.962

2.  Isolation and structure determination of the fluorescent base from bovine liver phenylalanine transfer ribonucleic acid.

Authors:  S H Blobstein; D Grunberger; I B Weinstein; K Nakanishi
Journal:  Biochemistry       Date:  1973-01-16       Impact factor: 3.162

3.  Study on the properties and structure of the modified base Y+ of yeast tRNA Phe .

Authors:  R Thiebe; H G Zachau; L Baczynskyj; K Biemann; J Sonnenbichler
Journal:  Biochim Biophys Acta       Date:  1971-06-30

4.  Isolation and characterization of peroxy-Y base from phenylalanine transfer ribonucleic acid of the plant, Lupinus luteus.

Authors:  A M Feinberg; K Nakanishi; J Barciszewski; A J Rafalski; H Augustyniak; M Wiewiórowski
Journal:  J Am Chem Soc       Date:  1974-12-11       Impact factor: 15.419

5.  Mass spectrometry of nucleic acid components. Trimethylsilyl derivatives of nucleotides, nucleosides, and bases.

Authors:  J A McCloskey; A M Lawson; K Tsuboyama; P M Krueger; R N Stillwell
Journal:  J Am Chem Soc       Date:  1968-07-17       Impact factor: 15.419

6.  Structure of the "peroxy-Y base" from liver tRNA Phe .

Authors:  K Nakanishi; S Blobstein; M Funamizu; N Furutachi; G Van Lear; D Grunberger; K W Lanks; I B Weinstein
Journal:  Nat New Biol       Date:  1971-11-24

7.  Structure of the fluorescent Y base from yeast phenylalanine transfer ribonucleic acid.

Authors:  K Nakanishi; N Furutachi; M Funamizu; D Grunberger; I B Weinstein
Journal:  J Am Chem Soc       Date:  1970-12-30       Impact factor: 15.419

8.  Chemical modification of the fluorescent base in phenylalanine transfer ribonucleic acid.

Authors:  D Yoshikami; E B Keller
Journal:  Biochemistry       Date:  1971-07-20       Impact factor: 3.162
  8 in total
  10 in total

Review 1.  Summary: the modified nucleosides of RNA.

Authors:  P A Limbach; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1994-06-25       Impact factor: 16.971

2.  TYW1: A Radical SAM Enzyme Involved in the Biosynthesis of Wybutosine Bases.

Authors:  Anthony P Young; Vahe Bandarian
Journal:  Methods Enzymol       Date:  2018-06-06       Impact factor: 1.600

Review 3.  Radical SAM enzymes involved in the biosynthesis of purine-based natural products.

Authors:  Vahe Bandarian
Journal:  Biochim Biophys Acta       Date:  2012-08-03

4.  Changes of post-transcriptional modification of wye base in tumor-specific tRNAPhe.

Authors:  Y Kuchino; E Borek; D Grunberger; J F Mushinski; S Nishimura
Journal:  Nucleic Acids Res       Date:  1982-10-25       Impact factor: 16.971

5.  Expanding role of the jumonji C domain as an RNA hydroxylase.

Authors:  Akiko Noma; Ryuichiro Ishitani; Megumi Kato; Asuteka Nagao; Osamu Nureki; Tsutomu Suzuki
Journal:  J Biol Chem       Date:  2010-08-25       Impact factor: 5.157

6.  Methylation of desmethyl analogue of Y nucleosides. Wyosine from guanosine.

Authors:  B Golankiewicz; W Folkman
Journal:  Nucleic Acids Res       Date:  1983-08-11       Impact factor: 16.971

7.  Origin and evolution of peptide-modifying dioxygenases and identification of the wybutosine hydroxylase/hydroperoxidase.

Authors:  Lakshminarayan M Iyer; Saraswathi Abhiman; Robson F de Souza; L Aravind
Journal:  Nucleic Acids Res       Date:  2010-04-27       Impact factor: 16.971

Review 8.  Naturally occurring modified ribonucleosides.

Authors:  Phillip J McCown; Agnieszka Ruszkowska; Charlotte N Kunkler; Kurtis Breger; Jacob P Hulewicz; Matthew C Wang; Noah A Springer; Jessica A Brown
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-04-16       Impact factor: 9.349

9.  Biochemical and Structural Characterization of a Schiff Base in the Radical-Mediated Biosynthesis of 4-Demethylwyosine by TYW1.

Authors:  Tsehai A J Grell; Anthony P Young; Catherine L Drennan; Vahe Bandarian
Journal:  J Am Chem Soc       Date:  2018-05-24       Impact factor: 15.419

10.  Enzymatic conversion of guanosine 3' adjacent to the anticodon of yeast tRNAPhe to N1-methylguanosine and the wye nucleoside: dependence on the anticodon sequence.

Authors:  L Droogmans; H Grosjean
Journal:  EMBO J       Date:  1987-02       Impact factor: 11.598
  10 in total

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