Literature DB >> 30097090

TYW1: A Radical SAM Enzyme Involved in the Biosynthesis of Wybutosine Bases.

Anthony P Young1, Vahe Bandarian2.   

Abstract

Transfer RNA is extensively modified by the actions of a variety of enzymes. The radical S-adenosyl-l-methionine enzyme TYW1 modifies tRNAPhe forming the characteristic tricyclic ring via the condensation of carbons 2 and 3 of pyruvate. This chapter details methods that are required for studies of TYW1.
© 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Radical SAM; TYW1; Wyosine; tRNA; tRNA modification

Mesh：

Substances：

Year:  2018        PMID： 30097090      PMCID： PMC6448148          DOI： 10.1016/bs.mie.2018.04.024

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


  41 in total

1.  A primordial tRNA modification required for the evolution of life?

Authors:  G R Björk; K Jacobsson; K Nilsson; M J Johansson; A S Byström; O P Persson
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2.  The P1' specificity of tobacco etch virus protease.

Authors:  Rachel B Kapust; József Tözsér; Terry D Copeland; David S Waugh
Journal:  Biochem Biophys Res Commun       Date:  2002-06-28       Impact factor: 3.575

3.  Crystal structure of biotin synthase, an S-adenosylmethionine-dependent radical enzyme.

Authors:  Frederick Berkovitch; Yvain Nicolet; Jason T Wan; Joseph T Jarrett; Catherine L Drennan
Journal:  Science       Date:  2004-01-02       Impact factor: 47.728

4.  Studies on polynucleotides, lxviii the primary structure of yeast phenylalanine transfer RNA.

Authors:  U L Rajbhandary; S H Chang; A Stuart; R D Faulkner; R M Hoskinson; H G Khorana
Journal:  Proc Natl Acad Sci U S A       Date:  1967-03       Impact factor: 11.205

5.  Electron-nuclear double resonance spectroscopic evidence that S-adenosylmethionine binds in contact with the catalytically active [4Fe-4S](+) cluster of pyruvate formate-lyase activating enzyme.

Authors:  Charles J Walsby; Wei Hong; William E Broderick; Jennifer Cheek; Danilo Ortillo; Joan B Broderick; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2002-03-27       Impact factor: 15.419

6.  The molecular architecture of human N-acetylgalactosamine kinase.

Authors:  James B Thoden; Hazel M Holden
Journal:  J Biol Chem       Date:  2005-07-08       Impact factor: 5.157

7.  Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods.

Authors:  H J Sofia; G Chen; B G Hetzler; J F Reyes-Spindola; N E Miller
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

8.  Discovery of a gene family critical to wyosine base formation in a subset of phenylalanine-specific transfer RNAs.

Authors:  William F Waas; Valérie de Crécy-Lagard; Paul Schimmel
Journal:  J Biol Chem       Date:  2005-09-13       Impact factor: 5.157

9.  Insight into the polar reactivity of the onium chalcogen analogues of S-adenosyl-L-methionine.

Authors:  David F Iwig; Squire J Booker
Journal:  Biochemistry       Date:  2004-10-26       Impact factor: 3.162

Review 10.  Biosynthesis of iron-sulphur clusters is a complex and highly conserved process.

Authors:  J Frazzon; J R Fick; D R Dean
Journal:  Biochem Soc Trans       Date:  2002-08       Impact factor: 5.407
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  3 in total

1.  Site-Specific Profiling of 4-Thiouridine Across Transfer RNA Genes in Escherichia coli.

Authors:  Praneeth Bommisetti; Vahe Bandarian
Journal:  ACS Omega       Date:  2022-01-27

2.  Eukaryotic TYW1 Is a Radical SAM Flavoenzyme.

Authors:  Anthony P Young; Vahe Bandarian
Journal:  Biochemistry       Date:  2021-06-29       Impact factor: 3.321

3.  In-depth analysis reveals complex molecular aetiology in a cohort of idiopathic cerebral palsy.

Authors:  Na Li; Pei Zhou; Hongmei Tang; Lu He; Xiang Fang; Jinxiang Zhao; Xin Wang; Yifei Qi; Chuanbo Sun; Yunting Lin; Fengying Qin; Miaomiao Yang; Zhan Zhang; Caihua Liao; Shuxin Zheng; Xiaofang Peng; Ting Xue; Qianying Zhu; Hong Li; Yan Li; Liru Liu; Jingyu Huang; Li Liu; Changgeng Peng; Angela M Kaindl; Jozef Gecz; Dingding Han; Dong Liu; Kaishou Xu; Hao Hu
Journal:  Brain       Date:  2022-03-29       Impact factor: 13.501
  3 in total

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