Literature DB >> 20727732

Functional nucleic acid nanostructures and DNA machines.

Carsten Teller1, Itamar Willner.   

Abstract

The information encoded in the base sequence of DNA provides instructions for the structural and functional properties of this biopolymer. Structural information includes the formation of duplexes, supramolecular crossover tiles, G-quadruplexes, i-motifs, base-metal-ion complexes, and more. Functional information encoded in the DNA is reflected by specific binding (aptamers) or catalytic properties (DNAzymes). Recent advances in tailoring supramolecular DNA structures for DNA-based machinery and for amplified biosensing are reviewed. Different DNA machines that perform 'tweezer', 'walker' or 'metronome' functions are discussed, and the control of macroscopic surface properties or the motility of micro-objects by molecular DNA devices is introduced. Furthermore, the design of DNA machines for the ultrasensitive detection of DNA, low-molecular-weight substrates, and macromolecules is discussed. Supramolecular aptamer and DNAzyme structures are used as molecular tools for amplified sensing.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20727732     DOI: 10.1016/j.copbio.2010.06.001

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  29 in total

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Authors:  Johann Elbaz; Itamar Willner
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Authors:  Sundus Erbas-Cakmak; David A Leigh; Charlie T McTernan; Alina L Nussbaumer
Journal:  Chem Rev       Date:  2015-09-08       Impact factor: 60.622

3.  Computational docking simulations of a DNA-aptamer for argininamide and related ligands.

Authors:  H Bauke Albada; Eyal Golub; Itamar Willner
Journal:  J Comput Aided Mol Des       Date:  2015-04-16       Impact factor: 3.686

4.  Bottom-Up Strategy To Prepare Nanoparticles with a Single DNA Strand.

Authors:  Hang Xing; Yugang Bai; Yunhao Bai; Li Huey Tan; Jing Tao; Benjamin Pedretti; Gretchen A Vincil; Yi Lu; Steven C Zimmerman
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Review 5.  Functional nucleic acid-based hydrogels for bioanalytical and biomedical applications.

Authors:  Juan Li; Liuting Mo; Chun-Hua Lu; Ting Fu; Huang-Hao Yang; Weihong Tan
Journal:  Chem Soc Rev       Date:  2016-03-07       Impact factor: 54.564

Review 6.  DNA as sensors and imaging agents for metal ions.

Authors:  Yu Xiang; Yi Lu
Journal:  Inorg Chem       Date:  2013-12-20       Impact factor: 5.165

7.  Photon-regulated DNA-enzymatic nanostructures by molecular assembly.

Authors:  Mingxu You; Ruo-Wen Wang; Xiaobing Zhang; Yan Chen; Kelong Wang; Lu Peng; Weihong Tan
Journal:  ACS Nano       Date:  2011-11-28       Impact factor: 15.881

8.  Expanding targets of DNAzyme-based sensors through deactivation and activation of DNAzymes by single uracil removal: sensitive fluorescent assay of uracil-DNA glycosylase.

Authors:  Yu Xiang; Yi Lu
Journal:  Anal Chem       Date:  2012-10-29       Impact factor: 6.986

9.  Terminal hairpin in oligonucleotide dominantly prioritizes intramolecular cyclization by T4 ligase over intermolecular polymerization: an exclusive methodology for producing ssDNA rings.

Authors:  Yixiao Cui; Xutiange Han; Ran An; Yaping Zhang; Kai Cheng; Xingguo Liang; Makoto Komiyama
Journal:  Nucleic Acids Res       Date:  2018-12-14       Impact factor: 16.971

10.  Oligonucleotide-Based Systems for Input-Controlled and Non-Covalently Regulated Protein-Binding.

Authors:  Cooper Battle; Xiaozhu Chu; Janarthanan Jayawickramarajah
Journal:  Supramol Chem       Date:  2013-01-01       Impact factor: 1.688

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