Literature DB >> 22098552

Photon-regulated DNA-enzymatic nanostructures by molecular assembly.

Mingxu You1, Ruo-Wen Wang, Xiaobing Zhang, Yan Chen, Kelong Wang, Lu Peng, Weihong Tan.   

Abstract

Future smart nanostructures will have to rely on molecular assembly for unique or advanced desired functions. For example, the evolved ribosome in nature is one example of functional self-assembly of nucleic acids and proteins employed in nature to perform specific tasks. Artificial self-assembled nanodevices have also been developed to mimic key biofunctions, and various nucleic acid- and protein-based functional nanoassemblies have been reported. However, functionally regulating these nanostructures is still a major challenge. Here we report a general approach to fine-tune the catalytic function of DNA-enzymatic nanosized assemblies by taking advantage of the trans-cis isomerization of azobenzene molecules. To the best of our knowledge, this is the first study to precisely modulate the structures and functions of an enzymatic assembly based on light-induced DNA scaffold switching. Via photocontrolled DNA conformational switching, the proximity of multiple enzyme catalytic centers can be adjusted, as well as the catalytic efficiency of cofactor-mediated DNAzymes. We expect that this approach will lead to the advancement of DNA-enzymatic functional nanostructures in future biomedical and analytical applications.

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Year:  2011        PMID: 22098552      PMCID: PMC3246559          DOI: 10.1021/nn204007y

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  40 in total

1.  Functional nucleic acid nanostructures and DNA machines.

Authors:  Carsten Teller; Itamar Willner
Journal:  Curr Opin Biotechnol       Date:  2010-08-19       Impact factor: 9.740

2.  Ion-induced DNAzyme switches.

Authors:  Simcha Shimron; Johann Elbaz; Anja Henning; Itamar Willner
Journal:  Chem Commun (Camb)       Date:  2010-03-26       Impact factor: 6.222

3.  Orthogonal protein decoration of DNA origami.

Authors:  Barbara Saccà; Rebecca Meyer; Michael Erkelenz; Kathrin Kiko; Andreas Arndt; Hendrik Schroeder; Kersten S Rabe; Christof M Niemeyer
Journal:  Angew Chem Int Ed Engl       Date:  2010-12-03       Impact factor: 15.336

4.  DNA-guided crystallization of colloidal nanoparticles.

Authors:  Dmytro Nykypanchuk; Mathew M Maye; Daniel van der Lelie; Oleg Gang
Journal:  Nature       Date:  2008-01-31       Impact factor: 49.962

5.  Positional assembly of enzymes in polymersome nanoreactors for cascade reactions.

Authors:  Dennis M Vriezema; Paula M L Garcia; Núria Sancho Oltra; Nikos S Hatzakis; Suzanne M Kuiper; Roeland J M Nolte; Alan E Rowan; Jan C M van Hest
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

Review 6.  DNA nanomachines.

Authors:  Jonathan Bath; Andrew J Turberfield
Journal:  Nat Nanotechnol       Date:  2007-05       Impact factor: 39.213

Review 7.  Functional nucleic acid sensors.

Authors:  Juewen Liu; Zehui Cao; Yi Lu
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

Review 8.  Semisynthetic DNA-protein conjugates for biosensing and nanofabrication.

Authors:  Christof M Niemeyer
Journal:  Angew Chem Int Ed Engl       Date:  2010-02-08       Impact factor: 15.336

9.  Synthesis of azobenzene-tethered DNA for reversible photo-regulation of DNA functions: hybridization and transcription.

Authors:  Hiroyuki Asanuma; Xingguo Liang; Hidenori Nishioka; Daijiro Matsunaga; Mingzhe Liu; Makoto Komiyama
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

10.  Light-activated kinases enable temporal dissection of signaling networks in living cells.

Authors:  Arnaud Gautier; Alexander Deiters; Jason W Chin
Journal:  J Am Chem Soc       Date:  2011-01-27       Impact factor: 15.419

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  7 in total

1.  Building a nanostructure with reversible motions using photonic energy.

Authors:  Mingxu You; Fujian Huang; Zhuo Chen; Ruo-Wen Wang; Weihong Tan
Journal:  ACS Nano       Date:  2012-07-26       Impact factor: 15.881

Review 2.  Functional protein nanostructures: a chemical toolbox.

Authors:  Seah Ling Kuan; Fernando R G Bergamini; Tanja Weil
Journal:  Chem Soc Rev       Date:  2018-11-19       Impact factor: 54.564

3.  Simple and efficient method to purify DNA-protein conjugates and its sensing applications.

Authors:  Zhaojuan Zhou; Yu Xiang; Aijun Tong; Yi Lu
Journal:  Anal Chem       Date:  2014-03-28       Impact factor: 6.986

4.  Barcode extension for analysis and reconstruction of structures.

Authors:  Cameron Myhrvold; Michael Baym; Nikita Hanikel; Luvena L Ong; Jonathan S Gootenberg; Peng Yin
Journal:  Nat Commun       Date:  2017-03-13       Impact factor: 14.919

5.  DNA-mediated assembly of protein heterodimers on membrane surfaces.

Authors:  Michael P Coyle; Qian Xu; Samantha Chiang; Matthew B Francis; Jay T Groves
Journal:  J Am Chem Soc       Date:  2013-03-26       Impact factor: 15.419

6.  In vivo co-localization of enzymes on RNA scaffolds increases metabolic production in a geometrically dependent manner.

Authors:  Gairik Sachdeva; Abhishek Garg; David Godding; Jeffrey C Way; Pamela A Silver
Journal:  Nucleic Acids Res       Date:  2014-07-17       Impact factor: 16.971

Review 7.  DNA Assembly-Based Stimuli-Responsive Systems.

Authors:  Shasha Lu; Jianlei Shen; Chunhai Fan; Qian Li; Xiurong Yang
Journal:  Adv Sci (Weinh)       Date:  2021-05-14       Impact factor: 16.806

  7 in total

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