Literature DB >> 24359450

DNA as sensors and imaging agents for metal ions.

Yu Xiang1, Yi Lu.   

Abstract

Increasing interest in detecting metal ions in many chemical and biomedical fields has created demands for developing sensors and imaging agents for metal ions with high sensitivity and selectivity. This review covers recent progress in DNA-based sensors and imaging agents for metal ions. Through both combinatorial selection and rational design, a number of metal-ion-dependent DNAzymes and metal-ion-binding DNA structures that can selectively recognize specific metal ions have been obtained. By attachment of these DNA molecules with signal reporters such as fluorophores, chromophores, electrochemical tags, and Raman tags, a number of DNA-based sensors for both diamagnetic and paramagnetic metal ions have been developed for fluorescent, colorimetric, electrochemical, and surface Raman detection. These sensors are highly sensitive (with a detection limit down to 11 ppt) and selective (with selectivity up to millions-fold) toward specific metal ions. In addition, through further development to simplify the operation, such as the use of "dipstick tests", portable fluorometers, computer-readable disks, and widely available glucose meters, these sensors have been applied for on-site and real-time environmental monitoring and point-of-care medical diagnostics. The use of these sensors for in situ cellular imaging has also been reported. The generality of the combinatorial selection to obtain DNAzymes for almost any metal ion in any oxidation state and the ease of modification of the DNA with different signal reporters make DNA an emerging and promising class of molecules for metal-ion sensing and imaging in many fields of applications.

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Year:  2013        PMID: 24359450      PMCID: PMC3955431          DOI: 10.1021/ic4019103

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  289 in total

Review 1.  RNA and DNA complexes with hemin [Fe(III) heme] are efficient peroxidases and peroxygenases: how do they do it and what does it mean?

Authors:  Dipankar Sen; Lester C H Poon
Journal:  Crit Rev Biochem Mol Biol       Date:  2011-09-29       Impact factor: 8.250

2.  G-quadruplex facilitated turn-off fluorescent chemosensor for selective detection of cupric ion.

Authors:  Haixia Qin; Jiangtao Ren; Jiahai Wang; Erkang Wang
Journal:  Chem Commun (Camb)       Date:  2010-09-07       Impact factor: 6.222

3.  One-step, room temperature, colorimetric detection of mercury (Hg2+) using DNA/nanoparticle conjugates.

Authors:  Xuejia Xue; Feng Wang; Xiaogang Liu
Journal:  J Am Chem Soc       Date:  2008-02-23       Impact factor: 15.419

4.  Silver-ion-mediated DNAzyme switch for the ultrasensitive and selective colorimetric detection of aqueous Ag+ and cysteine.

Authors:  Tao Li; Lili Shi; Erkang Wang; Shaojun Dong
Journal:  Chemistry       Date:  2009       Impact factor: 5.236

5.  Specific interactions between silver(I) ions and cytosine-cytosine pairs in DNA duplexes.

Authors:  Akira Ono; Shiqi Cao; Humika Togashi; Mitsuru Tashiro; Takashi Fujimoto; Tomoya Machinami; Shuji Oda; Yoko Miyake; Itaru Okamoto; Yoshiyuki Tanaka
Journal:  Chem Commun (Camb)       Date:  2008-08-22       Impact factor: 6.222

6.  Fluorogenic DNAzyme probes as bacterial indicators.

Authors:  M Monsur Ali; Sergio D Aguirre; Hadeer Lazim; Yingfu Li
Journal:  Angew Chem Int Ed Engl       Date:  2011-03-15       Impact factor: 15.336

7.  Silver(I)-mediated cytosine self-pairing is preferred over hoogsteen-type base pairs with the artificial nucleobase 1,3-dideaza-6-nitropurine.

Authors:  Dominik A Megger; Jens Muller
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2010-01       Impact factor: 1.381

8.  A smart T(1)-weighted MRI contrast agent for uranyl cations based on a DNAzyme-gadolinium conjugate.

Authors:  Weichen Xu; Hang Xing; Yi Lu
Journal:  Analyst       Date:  2013-11-07       Impact factor: 4.616

9.  Imaging of the intracellular topography of copper with a fluorescent sensor and by synchrotron x-ray fluorescence microscopy.

Authors:  Liuchun Yang; Reagan McRae; Maged M Henary; Raxit Patel; Barry Lai; Stefan Vogt; Christoph J Fahrni
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-01       Impact factor: 11.205

10.  A DNA metalloenzyme with DNA ligase activity.

Authors:  B Cuenoud; J W Szostak
Journal:  Nature       Date:  1995-06-15       Impact factor: 49.962

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  31 in total

Review 1.  Metal-Dependent DNAzymes for the Quantitative Detection of Metal Ions in Living Cells: Recent Progress, Current Challenges, and Latest Results on FRET Ratiometric Sensors.

Authors:  Kevin Hwang; Quanbing Mou; Ryan J Lake; Mengyi Xiong; Brandalynn Holland; Yi Lu
Journal:  Inorg Chem       Date:  2019-07-31       Impact factor: 5.165

2.  Fluorescent nanoprobes for sensing and imaging of metal ions: recent advances and future perspectives.

Authors:  JingJing Zhang; FangFang Cheng; JingJing Li; Jun-Jie Zhu; Yi Lu
Journal:  Nano Today       Date:  2016-06-11       Impact factor: 20.722

3.  Optical Control of Metal Ion Probes in Cells and Zebrafish Using Highly Selective DNAzymes Conjugated to Upconversion Nanoparticles.

Authors:  Zhenglin Yang; Kang Yong Loh; Yueh-Te Chu; Ruopei Feng; Nitya Sai Reddy Satyavolu; Mengyi Xiong; Stephanie M Nakamata Huynh; Kevin Hwang; Lele Li; Hang Xing; Xiaobing Zhang; Yann R Chemla; Martin Gruebele; Yi Lu
Journal:  J Am Chem Soc       Date:  2018-12-04       Impact factor: 15.419

4.  Photocaged DNAzymes as a general method for sensing metal ions in living cells.

Authors:  Kevin Hwang; Peiwen Wu; Taejin Kim; Lei Lei; Shiliang Tian; Yingxiao Wang; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2014-10-14       Impact factor: 15.336

Review 5.  Catalytic DNA: Scope, Applications, and Biochemistry of Deoxyribozymes.

Authors:  Scott K Silverman
Journal:  Trends Biochem Sci       Date:  2016-05-25       Impact factor: 13.807

6.  A reagentless DNA-based electrochemical silver(I) sensor for real time detection of Ag(I) - the effect of probe sequence and orientation on sensor response.

Authors:  Yao Wu; Rebecca Y Lai
Journal:  Biotechnol J       Date:  2016-03-15       Impact factor: 4.677

7.  DNAzyme Based Amplified Biosensor on Ultrasensitive Fluorescence Detection of Pb (II) Ions from Aqueous System.

Authors:  A Ravikumar; P Panneerselvam; K Radhakrishnan; Norhashimah Morad; C D Anuradha; S Sivanesan
Journal:  J Fluoresc       Date:  2017-08-17       Impact factor: 2.217

8.  In vitro selection of a sodium-specific DNAzyme and its application in intracellular sensing.

Authors:  Seyed-Fakhreddin Torabi; Peiwen Wu; Claire E McGhee; Lu Chen; Kevin Hwang; Nan Zheng; Jianjun Cheng; Yi Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

9.  Biochemical and Biophysical Understanding of Metal Ion Selectivity of DNAzymes.

Authors:  Kevin Hwang; Parisa Hosseinzadeh; Yi Lu
Journal:  Inorganica Chim Acta       Date:  2016-04-23       Impact factor: 2.545

10.  Identification of the Same Na(+)-Specific DNAzyme Motif from Two In Vitro Selections Under Different Conditions.

Authors:  Seyed-Fakhreddin Torabi; Yi Lu
Journal:  J Mol Evol       Date:  2015-11-17       Impact factor: 2.395

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