Literature DB >> 24187478

Oligonucleotide-Based Systems for Input-Controlled and Non-Covalently Regulated Protein-Binding.

Cooper Battle1, Xiaozhu Chu, Janarthanan Jayawickramarajah.   

Abstract

Supramolecular chemists continuously take inspiration from complex biological systems to develop functional molecules involved in molecular recognition and self-assembly. In this regard, "smart" synthetic molecules that emulate allosteric proteins are both exciting and challenging, since many allosteric proteins can be considered as molecular switches that bind to other protein targets in a non-covalent fashion, and importantly, are capable of having their output activity controlled by prior binding to input molecules. This review discusses the foundations and passage toward the development of non-covalently operated oligonucleotide-based systems with protein-binding capacity that can be precisely regulated in an input-controlled manner.

Entities:  

Keywords:  input-responsive; multivalency; oligonucleotide; protein binding; structure-switching; supramolecular

Year:  2013        PMID: 24187478      PMCID: PMC3810975          DOI: 10.1080/10610278.2013.810337

Source DB:  PubMed          Journal:  Supramol Chem        ISSN: 1026-7816            Impact factor:   1.688


  106 in total

1.  Allosteric nucleic acid catalysts.

Authors:  G A Soukup; R R Breaker
Journal:  Curr Opin Struct Biol       Date:  2000-06       Impact factor: 6.809

2.  Nucleic acid-triggered catalytic drug release.

Authors:  Z Ma; J S Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-10       Impact factor: 11.205

3.  Reprogramming control of an allosteric signaling switch through modular recombination.

Authors:  John E Dueber; Brian J Yeh; Kayam Chak; Wendell A Lim
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

4.  Structure-switching signaling aptamers.

Authors:  Razvan Nutiu; Yingfu Li
Journal:  J Am Chem Soc       Date:  2003-04-23       Impact factor: 15.419

Review 5.  DNA as supramolecular scaffold for functional molecules: progress in DNA nanotechnology.

Authors:  Thomas J Bandy; Ashley Brewer; Jonathan R Burns; Gabriella Marth; Thaonguyen Nguyen; Eugen Stulz
Journal:  Chem Soc Rev       Date:  2010-08-09       Impact factor: 54.564

6.  DNA nanomachines and nanostructures involving quadruplexes.

Authors:  Patrizia Alberti; Anne Bourdoncle; Barbara Saccà; Laurent Lacroix; Jean-Louis Mergny
Journal:  Org Biomol Chem       Date:  2006-06-22       Impact factor: 3.876

7.  Inhibition of chymotrypsin by a self-assembled DNA quadruplex functionalized with cyclic peptide binding fragments.

Authors:  Jianfeng Cai; Brooke A Rosenzweig; Andrew D Hamilton
Journal:  Chemistry       Date:  2009       Impact factor: 5.236

Review 8.  Small-molecule discovery from DNA-encoded chemical libraries.

Authors:  Ralph E Kleiner; Christoph E Dumelin; David R Liu
Journal:  Chem Soc Rev       Date:  2011-06-14       Impact factor: 54.564

9.  Carbohydrate-PNA and aptamer-PNA conjugates for the spatial screening of lectins and lectin assemblies.

Authors:  Christian Scheibe; Stefanie Wedepohl; Sebastian B Riese; Jens Dernedde; Oliver Seitz
Journal:  Chembiochem       Date:  2013-01-04       Impact factor: 3.164

10.  Selective protein-surface sensing using ruthenium(II) tris(bipyridine) complexes.

Authors:  James Muldoon; Alison E Ashcroft; Andrew J Wilson
Journal:  Chemistry       Date:  2010-01-04       Impact factor: 5.236

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  3 in total

1.  Bile Acid Conjugated DNA Chimera that Conditionally Inhibits Carbonic Anhydrase-II in the Presence of MicroRNA-21.

Authors:  Xiaozhu Chu; Cooper H Battle; Nan Zhang; Gyan H Aryal; Madhusoodanan Mottamal; Janarthanan Jayawickramarajah
Journal:  Bioconjug Chem       Date:  2015-07-31       Impact factor: 4.774

2.  Mimicking the Function of Signaling Proteins: Toward Artificial Signal Transduction Therapy.

Authors:  Ronny Peri-Naor; Leila Motiei; David Margulies
Journal:  J Vis Exp       Date:  2016-09-29       Impact factor: 1.355

3.  Decorating bacteria with self-assembled synthetic receptors.

Authors:  Naama Lahav-Mankovski; Pragati Kishore Prasad; Noa Oppenheimer-Low; Gal Raviv; Tali Dadosh; Tamar Unger; Tomer Meir Salame; Leila Motiei; David Margulies
Journal:  Nat Commun       Date:  2020-03-10       Impact factor: 14.919

  3 in total

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