Literature DB >> 20700829

A Sensitive Pulse Scheme for Measuring the Backbone Dihedral Angle psi Based on Cross-correlation Between (13)C (alpha)- (1)Halpha Dipolar and Carbonyl Chemical Shift Anisotropy Relaxation Interactions.

D Yang1, K H Gardner, L E Kay.   

Abstract

A pulse scheme for measuring cross-correlation between 13Calpha-1Halpha dipolar and carbonyl chemical shift anisotropy relaxation mechanisms is presented from which the protein backbone dihedral angle psi is measured. The method offers significant sensitivity gains relative to our recently published scheme for measuring psi based on this cross-correlation effect [Yang et al. (1997) J. Am. Chem. Soc., 119, 11938-11940]. The utility of the method is demonstrated with an application to a 42 kDa complex of 15N,13C-labeled maltose binding protein and beta-cyclodextrin.

Entities:  

Year:  1998        PMID: 20700829     DOI: 10.1023/A:1008284315816

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  9 in total

1.  Direct measurement of angles between bond vectors in high-resolution NMR.

Authors:  B Reif; M Hennig; C Griesinger
Journal:  Science       Date:  1997-05-23       Impact factor: 47.728

2.  Structure of ubiquitin refined at 1.8 A resolution.

Authors:  S Vijay-Kumar; C E Bugg; W J Cook
Journal:  J Mol Biol       Date:  1987-04-05       Impact factor: 5.469

3.  An efficient 3D NMR technique for correlating the proton and 15N backbone amide resonances with the alpha-carbon of the preceding residue in uniformly 15N/13C enriched proteins.

Authors:  A Bax; M Ikura
Journal:  J Biomol NMR       Date:  1991-05       Impact factor: 2.835

4.  Short selective pulses for biochemical applications.

Authors:  E Kupce; J Boyd; I D Campbell
Journal:  J Magn Reson B       Date:  1995-03

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Refined 1.8-A structure reveals the mode of binding of beta-cyclodextrin to the maltodextrin binding protein.

Authors:  A J Sharff; L E Rodseth; F A Quiocho
Journal:  Biochemistry       Date:  1993-10-12       Impact factor: 3.162

7.  Structure of the Mg(2+)-bound form of CheY and mechanism of phosphoryl transfer in bacterial chemotaxis.

Authors:  A M Stock; E Martinez-Hackert; B F Rasmussen; A H West; J B Stock; D Ringe; G A Petsko
Journal:  Biochemistry       Date:  1993-12-14       Impact factor: 3.162

8.  Characterization of the three-dimensional solution structure of human profilin: 1H, 13C, and 15N NMR assignments and global folding pattern.

Authors:  W J Metzler; K L Constantine; M S Friedrichs; A J Bell; E G Ernst; T B Lavoie; L Mueller
Journal:  Biochemistry       Date:  1993-12-21       Impact factor: 3.162

9.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

  9 in total
  13 in total

1.  Refinement of the protein backbone angle psi in NMR structure calculations.

Authors:  R Sprangers; M J Bottomley; J P Linge; J Schultz; M Nilges; M Sattler
Journal:  J Biomol NMR       Date:  2000-01       Impact factor: 2.835

2.  How uniform is the peptide plane geometry? A high-accuracy NMR study of dipolar Cα-C'/H N-N cross-correlated relaxation.

Authors:  Beat Vögeli
Journal:  J Biomol NMR       Date:  2011-06-03       Impact factor: 2.835

3.  Cross-correlated relaxation rates between protein backbone H-X dipolar interactions.

Authors:  Beat Vögeli
Journal:  J Biomol NMR       Date:  2017-03-12       Impact factor: 2.835

4.  Efficient determination of angles subtended by C(alpha)-H(alpha) and N-H(N) vectors in proteins via dipole-dipole cross-correlation.

Authors:  P Pelupessy; E Chiarparin; R Ghose; G Bodenhausen
Journal:  J Biomol NMR       Date:  1999-04       Impact factor: 2.835

5.  Differential multiple-quantum relaxation arising from cross-correlated time-modulation of isotropic chemical shifts.

Authors:  K Kloiber; R Konrat
Journal:  J Biomol NMR       Date:  2000-09       Impact factor: 2.835

6.  Pairwise NMR experiments for the determination of protein backbone dihedral angle Phi based on cross-correlated spin relaxation.

Authors:  Hideo Takahashi; Ichio Shimada
Journal:  J Biomol NMR       Date:  2007-01-20       Impact factor: 2.835

7.  Correlated dynamics between protein HN and HC bonds observed by NMR cross relaxation.

Authors:  Beat Vögeli; Lishan Yao
Journal:  J Am Chem Soc       Date:  2009-03-18       Impact factor: 15.419

8.  Cross correlations between 13C-1H dipolar interactions and 15N chemical shift anisotropy in nucleic acids.

Authors:  Sapna Ravindranathan; Chul-Hyun Kim; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

9.  TROSY experiment for refinement of backbone psi and phi by simultaneous measurements of cross-correlated relaxation rates and 3,4J(H alpha HN) coupling constants.

Authors:  Beat Vögeli; Konstantin Pervushin
Journal:  J Biomol NMR       Date:  2002-12       Impact factor: 2.835

10.  Cross correlation rates between Curie spin and dipole-dipole relaxation in paramagnetic proteins: the case of cerium substituted calbindin D9k.

Authors:  Ivano Bertini; Gabriele Cavallaro; Marta Cosenza; Rainer Kümmerle; Claudio Luchinat; Mario Piccioli; Luisa Poggi
Journal:  J Biomol NMR       Date:  2002-06       Impact factor: 2.835

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.