Literature DB >> 10383199

Efficient determination of angles subtended by C(alpha)-H(alpha) and N-H(N) vectors in proteins via dipole-dipole cross-correlation.

P Pelupessy1, E Chiarparin, R Ghose, G Bodenhausen.   

Abstract

The angle Theta(C(alpha)H(alpha)),NH(N) subtended by the internuclear vectors 13C(alpha)-H(alpha) and 15N-H(N) in doubly-labeled proteins can be determined by observing the effect of cross-correlation between the dipolar interactions on zero- and double-quantum coherences involving 13C(alpha) and 15N. Two complementary 2D experiments with the appearance of 15N-HN correlation spectra yield signal intensities that depend on the rate of interconversion through cross-correlated relaxation of in-phase and doubly antiphase zero- and double-quantum coherences. The ratio of the signal intensities in the two experiments bears a simple relationship to the cross-correlation rate, and hence to the angle Theta(C(alpha)H(alpha),NH(N)). Assuming planarity of the peptide bond, the dihedral angle psi (between C(alpha) and C) can be determined from the knowledge of Theta(C(alpha)H(alpha),NH(N)). The experiments are very time-effective and provide good sensitivity and excellent spectral resolution.

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Year:  1999        PMID: 10383199     DOI: 10.1023/a:1008383205836

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  7 in total

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2.  Direct measurement of angles between bond vectors in high-resolution NMR.

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Journal:  Science       Date:  1997-05-23       Impact factor: 47.728

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Authors:  S Vijay-Kumar; C E Bugg; W J Cook
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Authors:  A Bax; M Ikura
Journal:  J Biomol NMR       Date:  1991-05       Impact factor: 2.835

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  A Sensitive Pulse Scheme for Measuring the Backbone Dihedral Angle psi Based on Cross-correlation Between (13)C (alpha)- (1)Halpha Dipolar and Carbonyl Chemical Shift Anisotropy Relaxation Interactions.

Authors:  D Yang; K H Gardner; L E Kay
Journal:  J Biomol NMR       Date:  1998-02       Impact factor: 2.835

7.  Quantitative investigation of dipole-CSA cross-correlated relaxation by ZQ/DQ spectroscopy.

Authors:  B Brutscher; N R Skrynnikov; T Bremi; R BrYschweiler; R R Ernst
Journal:  J Magn Reson       Date:  1998-02       Impact factor: 2.229

  7 in total
  15 in total

1.  Refinement of the protein backbone angle psi in NMR structure calculations.

Authors:  R Sprangers; M J Bottomley; J P Linge; J Schultz; M Nilges; M Sattler
Journal:  J Biomol NMR       Date:  2000-01       Impact factor: 2.835

2.  Correlated motions of successive amide N-H bonds in proteins.

Authors:  Philippe Pelupessy; Sapna Ravindranathan; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2003-04       Impact factor: 2.835

Review 3.  Weak alignment offers new NMR opportunities to study protein structure and dynamics.

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Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

4.  Quantitative gamma-HCNCH: determination of the glycosidic torsion angle chi in RNA oligonucleotides from the analysis of CH dipolar cross-correlated relaxation by solution NMR spectroscopy.

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Journal:  J Biomol NMR       Date:  2007-07-20       Impact factor: 2.835

Review 5.  An overview of recent developments in the interpretation and prediction of fast internal protein dynamics.

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6.  Side chain: backbone projections in aromatic and ASX residues from NMR cross-correlated relaxation.

Authors:  Beat Vögeli; Roland Riek
Journal:  J Biomol NMR       Date:  2009-11-11       Impact factor: 2.835

7.  How uniform is the peptide plane geometry? A high-accuracy NMR study of dipolar Cα-C'/H N-N cross-correlated relaxation.

Authors:  Beat Vögeli
Journal:  J Biomol NMR       Date:  2011-06-03       Impact factor: 2.835

8.  Cross-correlated relaxation rates between protein backbone H-X dipolar interactions.

Authors:  Beat Vögeli
Journal:  J Biomol NMR       Date:  2017-03-12       Impact factor: 2.835

9.  Determination of sugar conformation in large RNA oligonucleotides from analysis of dipole-dipole cross correlated relaxation by solution NMR spectroscopy.

Authors:  C Richter; C Griesinger; I Felli; P T Cole; G Varani; H Schwalbe
Journal:  J Biomol NMR       Date:  1999-11       Impact factor: 2.835

10.  Correlated dynamics between protein HN and HC bonds observed by NMR cross relaxation.

Authors:  Beat Vögeli; Lishan Yao
Journal:  J Am Chem Soc       Date:  2009-03-18       Impact factor: 15.419

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