Literature DB >> 12522294

TROSY experiment for refinement of backbone psi and phi by simultaneous measurements of cross-correlated relaxation rates and 3,4J(H alpha HN) coupling constants.

Beat Vögeli1, Konstantin Pervushin.   

Abstract

The TROSY principle has been introduced into a HNCA experiment, which is designed for measurements of the intraresidual and sequential H(alpha)-C(alpha)/H(N)-N dipole/dipole and H(alpha)-C(alpha)/N dipole/CSA cross-correlated relaxation rates. In addition, the new experiment provides values of the (3,4)J(H alpha HN) coupling constants measured in an E.COSY manner. The conformational restraints for the psi and phi angles are obtained through the use of the cross-correlated relaxation rates together with the Karplus-type dependencies of the coupling constants. Improved signal-to-noise is achieved through preservation of all coherence transfer pathways and application of the TROSY principle. The application of the [(15)N,(13)C]-DQ/ZQ-[(15)N,(1)H]-TROSY-E.COSY experiment to the 16 kDa apo-form of the E. coli Heme Chaperon protein CcmE is described. Overall good agreement is achieved between psi and phi angles measured with the new experiment and the average values determined from an ensemble of 20 NMR conformers.

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Year:  2002        PMID: 12522294     DOI: 10.1023/a:1021677216126

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  13 in total

Review 1.  Impact of transverse relaxation optimized spectroscopy (TROSY) on NMR as a technique in structural biology.

Authors:  K Pervushin
Journal:  Q Rev Biophys       Date:  2000-05       Impact factor: 5.318

2.  Calculations of NMR dipolar coupling strengths in model peptides.

Authors:  D A Case
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

3.  Refinement of the protein backbone angle psi in NMR structure calculations.

Authors:  R Sprangers; M J Bottomley; J P Linge; J Schultz; M Nilges; M Sattler
Journal:  J Biomol NMR       Date:  2000-01       Impact factor: 2.835

4.  Measurement of the protein backbone dihedral angle phi based on quantification of remote CSA/DD interference in inter-residue 13C'(i - 1)-13Calpha(i) multiple-quantum coherences.

Authors:  K Kloiber; R Konrat
Journal:  J Biomol NMR       Date:  2000-07       Impact factor: 2.835

5.  Direct measurement of angles between bond vectors in high-resolution NMR.

Authors:  B Reif; M Hennig; C Griesinger
Journal:  Science       Date:  1997-05-23       Impact factor: 47.728

6.  Measurement of four-bond HN-H alpha J-couplings in staphylococcal nuclease.

Authors:  G W Vuister; A Bax
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

7.  Efficient determination of angles subtended by C(alpha)-H(alpha) and N-H(N) vectors in proteins via dipole-dipole cross-correlation.

Authors:  P Pelupessy; E Chiarparin; R Ghose; G Bodenhausen
Journal:  J Biomol NMR       Date:  1999-04       Impact factor: 2.835

8.  Single Transition-to-single Transition Polarization Transfer (ST2-PT) in [15N,1H]-TROSY.

Authors:  K V Pervushin; G Wider; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

9.  Automated NMR determination of protein backbone dihedral angles from cross-correlated spin relaxation.

Authors:  Karin Kloiber; Wolfgang Schüler; Robert Konrat
Journal:  J Biomol NMR       Date:  2002-04       Impact factor: 2.835

10.  Cross-correlated relaxation for the measurement of angles between tensorial interactions.

Authors:  B Reif; A Diener; M Hennig; M Maurer; C Griesinger
Journal:  J Magn Reson       Date:  2000-03       Impact factor: 2.229

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  6 in total

1.  Side chain: backbone projections in aromatic and ASX residues from NMR cross-correlated relaxation.

Authors:  Beat Vögeli; Roland Riek
Journal:  J Biomol NMR       Date:  2009-11-11       Impact factor: 2.835

2.  How uniform is the peptide plane geometry? A high-accuracy NMR study of dipolar Cα-C'/H N-N cross-correlated relaxation.

Authors:  Beat Vögeli
Journal:  J Biomol NMR       Date:  2011-06-03       Impact factor: 2.835

3.  Cross-correlated relaxation rates between protein backbone H-X dipolar interactions.

Authors:  Beat Vögeli
Journal:  J Biomol NMR       Date:  2017-03-12       Impact factor: 2.835

4.  Correlated dynamics between protein HN and HC bonds observed by NMR cross relaxation.

Authors:  Beat Vögeli; Lishan Yao
Journal:  J Am Chem Soc       Date:  2009-03-18       Impact factor: 15.419

5.  Measurement of residual dipolar couplings from 1Halpha to 13Calpha and 15N using a simple HNCA-based experiment.

Authors:  Perttu Permi
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

Review 6.  Distance-independent Cross-correlated Relaxation and Isotropic Chemical Shift Modulation in Protein Dynamics Studies.

Authors:  Beat Vögeli; Liliya Vugmeyster
Journal:  Chemphyschem       Date:  2018-09-03       Impact factor: 3.520

  6 in total

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