Literature DB >> 20685393

Combining THz spectroscopy and MD simulations to study protein-hydration coupling.

Matthias Heyden1, Martina Havenith.   

Abstract

THz spectroscopy is combined with MD simulations to study the dynamical properties of water in the solvation shell of proteins. The solvation dynamics is found to be influenced on length-scales of several hydration layers which is significantly more than what is found for static properties. Our experiments show that the properties of this dynamical solvation shell depend on the folding state of the protein. Kinetic THz absorption studies allow us to observe the formation of the dynamical solvation shell of the native protein upon folding. The experimental results can be reproduced using MD simulations which helps to develop a molecular understanding in terms of retardation of water dynamics. Copyright (c) 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20685393     DOI: 10.1016/j.ymeth.2010.05.007

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  23 in total

1.  Site-specific hydration dynamics of globular proteins and the role of constrained water in solvent exchange with amphiphilic cosolvents.

Authors:  John T King; Evan J Arthur; Charles L Brooks; Kevin J Kubarych
Journal:  J Phys Chem B       Date:  2012-05-07       Impact factor: 2.991

2.  Enzymatic turnover of macromolecules generates long-lasting protein-water-coupled motions beyond reaction steady state.

Authors:  Jessica Dielmann-Gessner; Moran Grossman; Valeria Conti Nibali; Benjamin Born; Inna Solomonov; Gregg B Fields; Martina Havenith; Irit Sagi
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-25       Impact factor: 11.205

Review 3.  Locating and Navigating Energy Transport Networks in Proteins.

Authors:  Korey M Reid; David M Leitner
Journal:  Methods Mol Biol       Date:  2021

4.  Peptide-Protein Binding Investigated by Far-IR Spectroscopy and Molecular Dynamics Simulations.

Authors:  Yoann Cote; Yves Nominé; Juan Ramirez; Petra Hellwig; Roland H Stote
Journal:  Biophys J       Date:  2017-06-20       Impact factor: 4.033

5.  Long-range protein-water dynamics in hyperactive insect antifreeze proteins.

Authors:  Konrad Meister; Simon Ebbinghaus; Yao Xu; John G Duman; Arthur DeVries; Martin Gruebele; David M Leitner; Martina Havenith
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-31       Impact factor: 11.205

6.  Hydrogen Bond Network of Water around Protein Investigated with Terahertz and Infrared Spectroscopy.

Authors:  Keiichiro Shiraga; Yuichi Ogawa; Naoshi Kondo
Journal:  Biophys J       Date:  2016-12-20       Impact factor: 4.033

7.  Label-free sensing of the binding state of MUC1 peptide and anti-MUC1 aptamer solution in fluidic chip by terahertz spectroscopy.

Authors:  Xiang Zhao; Mingkun Zhang; Dongshan Wei; Yunxia Wang; Shihan Yan; Mengwan Liu; Xiang Yang; Ke Yang; Hong-Liang Cui; Weiling Fu
Journal:  Biomed Opt Express       Date:  2017-09-11       Impact factor: 3.732

8.  Pressure effects on collective density fluctuations in water and protein solutions.

Authors:  Daniela Russo; Alessio Laloni; Alessandra Filabozzi; Matthias Heyden
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-09       Impact factor: 11.205

9.  Correlated structural kinetics and retarded solvent dynamics at the metalloprotease active site.

Authors:  Moran Grossman; Benjamin Born; Matthias Heyden; Dmitry Tworowski; Gregg B Fields; Irit Sagi; Martina Havenith
Journal:  Nat Struct Mol Biol       Date:  2011-09-18       Impact factor: 15.369

10.  The Hydration Shell of Monomeric and Dimeric Insulin Studied by Terahertz Time-Domain Spectroscopy.

Authors:  Pengfei Wang; Xiangchao Wang; Liyuan Liu; Hongwei Zhao; Wei Qi; Mingxia He
Journal:  Biophys J       Date:  2019-07-03       Impact factor: 4.033

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