Literature DB >> 20649350

Unbiased diffusion in tubes with corrugated walls.

Leonardo Dagdug1, Marco-Vinicio Vazquez, Alexander M Berezhkovskii, Sergey M Bezrukov.   

Abstract

This study is devoted to unbiased motion of a point Brownian particle in a tube with corrugated walls made of conical sections of a varying length. Effective one-dimensional description in terms of the generalized Fick-Jacobs equation is used to derive a formula which gives the effective diffusion coefficient of the particle as a function of the geometric parameters of the tube. Comparison with the results of Brownian dynamics simulations allows us to establish the domain of applicability of both the one-dimensional description and the formula for the effective diffusion coefficient.

Mesh:

Year:  2010        PMID: 20649350      PMCID: PMC2921415          DOI: 10.1063/1.3431756

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  12 in total

1.  Kinetic equations for diffusion in the presence of entropic barriers.

Authors:  D Reguera; J M Rubí
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-11-21

2.  Variance of residence time spent by diffusing particle in a sub-domain. Path integral based approach.

Authors:  A M Berezhkovskii
Journal:  Chem Phys       Date:  2010-05-01       Impact factor: 2.348

3.  Projection of two-dimensional diffusion in a narrow channel onto the longitudinal dimension.

Authors:  P Kalinay; J K Percus
Journal:  J Chem Phys       Date:  2005-05-22       Impact factor: 3.488

4.  Corrections to the Fick-Jacobs equation.

Authors:  P Kalinay; J K Percus
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-10-05

5.  Diffusion in a tube of varying cross section: numerical study of reduction to effective one-dimensional description.

Authors:  A M Berezhkovskii; M A Pustovoit; S M Bezrukov
Journal:  J Chem Phys       Date:  2007-04-07       Impact factor: 3.488

6.  Transient diffusion in a tube with dead ends.

Authors:  Leonardo Dagdug; Alexander M Berezhkovskii; Yurii A Makhnovskii; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2007-12-14       Impact factor: 3.488

7.  Extended Fick-Jacobs equation: variational approach.

Authors:  P Kalinay; J K Percus
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-12-14

Review 8.  Diffusion in confined geometries.

Authors:  P Sekhar Burada; Peter Hänggi; Fabio Marchesoni; Gerhard Schmid; Peter Talkner
Journal:  Chemphyschem       Date:  2009-01-12       Impact factor: 3.102

9.  One-dimensional description of diffusion in a tube of abruptly changing diameter: Boundary homogenization based approach.

Authors:  Alexander M Berezhkovskii; Alexander V Barzykin; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2009-12-14       Impact factor: 3.488

10.  Entropic particle transport in periodic channels.

Authors:  P S Burada; G Schmid; P Talkner; P Hänggi; D Reguera; J M Rubí
Journal:  Biosystems       Date:  2008-04-01       Impact factor: 1.973

View more
  9 in total

1.  Biased diffusion in tubes formed by spherical compartments.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2010-10-07       Impact factor: 3.488

2.  Range of applicability of modified Fick-Jacobs equation in two dimensions.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2015-10-28       Impact factor: 3.488

3.  On the applicability of entropy potentials in transport problems.

Authors:  Alexander M Berezhkovskii; Sergey M Bezrukov
Journal:  Eur Phys J Spec Top       Date:  2014-12       Impact factor: 2.707

4.  Communication: Turnover behavior of effective mobility in a tube with periodic entropy potential.

Authors:  Leonardo Dagdug; Alexander M Berezhkovskii; Yurii A Makhnovskii; Vladimir Yu Zitserman; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2011-03-14       Impact factor: 3.488

5.  Analytical treatment of biased diffusion in tubes with periodic dead ends.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2011-03-28       Impact factor: 3.488

6.  Unbiased diffusion in two-dimensional channels with corrugated walls.

Authors:  Roberto Verdel; Leonardo Dagdug; Alexander M Berezhkovskii; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2016-02-28       Impact factor: 3.488

7.  Driven diffusion in a periodically compartmentalized tube: homogeneity versus intermittency of particle motion.

Authors:  Yu A Makhnovskii; A M Berezhkovskii; L V Bogachev; V Yu Zitserman
Journal:  J Phys Chem B       Date:  2011-03-18       Impact factor: 2.991

8.  Effective diffusion coefficient of a Brownian particle in a periodically expanded conical tube.

Authors:  Anatoly E Antipov; Alexander V Barzykin; Alexander M Berezhkovskii; Yurii A Makhnovskii; Vladimir Yu Zitserman; Sergei M Aldoshin
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2013-11-07

9.  Experimental and Theoretical Analysis of Metal Complex Diffusion through Cell Monolayer.

Authors:  Katarzyna Gałczyńska; Jarosław Rachuna; Karol Ciepluch; Magdalena Kowalska; Sławomir Wąsik; Tadeusz Kosztołowicz; Katarzyna D Lewandowska; Jacek Semaniak; Krystyna Kurdziel; Michał Arabski
Journal:  Entropy (Basel)       Date:  2021-03-17       Impact factor: 2.524

  9 in total

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