Literature DB >> 18462863

Entropic particle transport in periodic channels.

P S Burada1, G Schmid, P Talkner, P Hänggi, D Reguera, J M Rubí.   

Abstract

The dynamics of Brownian motion has widespread applications extending from transport in designed micro-channels up to its prominent role for inducing transport in molecular motors and Brownian motors. Here, Brownian transport is studied in micro-sized, two-dimensional periodic channels, exhibiting periodically varying cross-sections. The particles in addition are subjected to an external force acting alongside the direction of the longitudinal channel axis. For a fixed channel geometry, the dynamics of the two-dimensional problem is characterized by a single dimensionless parameter which is proportional to the ratio of the applied force and the temperature of the particle environment. In such structures entropic effects may play a dominant role. Under certain conditions the two-dimensional dynamics can be approximated by an effective one-dimensional motion of the particle in the longitudinal direction. The Langevin equation describing this reduced, one-dimensional process is of the type of the Fick-Jacobs equation. It contains an entropic potential determined by the varying extension of the eliminated channel direction, and a correction to the diffusion constant that introduces a space dependent diffusion. Different forms of this correction term have been suggested before, which we here compare for a particular class of models. We analyze the regime of validity of the Fick-Jacobs equation, both by means of analytical estimates and the comparisons with numerical results for the full two-dimensional stochastic dynamics. For the nonlinear mobility we find a temperature dependence which is opposite to that known for particle transport in periodic potentials. The influence of entropic effects is discussed for both, the nonlinear mobility and the effective diffusion constant.

Mesh:

Year:  2008        PMID: 18462863     DOI: 10.1016/j.biosystems.2008.03.006

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  11 in total

1.  Effective drift and diffusion of a particle jumping between mobile and immobile states.

Authors:  Alexander M Berezhkovskii; Sergey M Bezrukov
Journal:  J Electroanal Chem (Lausanne)       Date:  2011-09-15       Impact factor: 4.464

2.  Communication: drift velocity of Brownian particle in a periodically tapered tube induced by a time-periodic force with zero mean: dependence on the force period.

Authors:  V Yu Zitserman; A M Berezhkovskii; A E Antipov; Yu A Makhnovskii
Journal:  J Chem Phys       Date:  2011-09-28       Impact factor: 3.488

3.  Unbiased diffusion in tubes with corrugated walls.

Authors:  Leonardo Dagdug; Marco-Vinicio Vazquez; Alexander M Berezhkovskii; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2010-07-21       Impact factor: 3.488

4.  Communications: Drift and diffusion in a tube of periodically varying diameter. Driving force induced intermittency.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Yurii A Makhnovskii; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2010-06-14       Impact factor: 3.488

5.  Biased diffusion in tubes formed by spherical compartments.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2010-10-07       Impact factor: 3.488

6.  On the applicability of entropy potentials in transport problems.

Authors:  Alexander M Berezhkovskii; Sergey M Bezrukov
Journal:  Eur Phys J Spec Top       Date:  2014-12       Impact factor: 2.707

7.  Communication: Turnover behavior of effective mobility in a tube with periodic entropy potential.

Authors:  Leonardo Dagdug; Alexander M Berezhkovskii; Yurii A Makhnovskii; Vladimir Yu Zitserman; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2011-03-14       Impact factor: 3.488

8.  Analytical treatment of biased diffusion in tubes with periodic dead ends.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2011-03-28       Impact factor: 3.488

9.  Fluxes of non-interacting and strongly repelling particles through a single conical channel: Analytical results and their numerical tests.

Authors:  Alexander M Berezhkovskii; Mark A Pustovoit; Sergey M Bezrukov
Journal:  Chem Phys       Date:  2010-10-05       Impact factor: 2.348

10.  Diffusion in a tube of alternating diameter.

Authors:  Yu A Makhnovskii; A M Berezhkovskii; V Yu Zitserman
Journal:  Chem Phys       Date:  2009-11-11       Impact factor: 2.348

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