Literature DB >> 20635345

Crystal structure of a truncated urease accessory protein UreF from Helicobacter pylori.

Robert Lam1, Vladimir Romanov, Kathy Johns, Kevin P Battaile, Jean Wu-Brown, Jennifer L Guthrie, Robert P Hausinger, Emil F Pai, Nickolay Y Chirgadze.   

Abstract

Urease plays a central role in the pathogenesis of Helicobacter pylori in humans. Maturation of this nickel metalloenzyme in bacteria requires the participation of the accessory proteins UreD (termed UreH in H. pylori), UreF, and UreG, which form sequential complexes with the urease apoprotein as well as UreE, a metallochaperone. Here, we describe the crystal structure of C-terminal truncated UreF from H. pylori (residues 1-233), the first UreF structure to be determined, at 1.55 A resolution using SAD methods. UreF forms a dimer in vitro and adopts an all-helical fold congruent with secondary structure prediction. On the basis of evolutionary conservation analysis, the structure reveals a probable binding surface for interaction with other urease components as well as key conserved residues of potential functional relevance. 2010 Wiley-Liss, Inc.

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Year:  2010        PMID: 20635345      PMCID: PMC2978904          DOI: 10.1002/prot.22802

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  66 in total

Review 1.  Acid survival of Helicobacter pylori: how does urease activity trigger cytoplasmic pH homeostasis?

Authors:  Kerstin Stingl; Karlheinz Altendorf; Evert P Bakker
Journal:  Trends Microbiol       Date:  2002-02       Impact factor: 17.079

2.  Is it jolly SAD?

Authors:  Eleanor Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-10-23

3.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

4.  Structures of Cys319 variants and acetohydroxamate-inhibited Klebsiella aerogenes urease.

Authors:  M A Pearson; L O Michel; R P Hausinger; P A Karplus
Journal:  Biochemistry       Date:  1997-07-01       Impact factor: 3.162

5.  Thermodynamics of Ni2+, Cu2+, and Zn2+ binding to the urease metallochaperone UreE.

Authors:  Nicholas E Grossoehme; Scott B Mulrooney; Robert P Hausinger; Dean E Wilcox
Journal:  Biochemistry       Date:  2007-08-21       Impact factor: 3.162

6.  Structural analysis of the GAP-related domain from neurofibromin and its implications.

Authors:  K Scheffzek; M R Ahmadian; L Wiesmüller; W Kabsch; P Stege; F Schmitz; A Wittinghofer
Journal:  EMBO J       Date:  1998-08-03       Impact factor: 11.598

7.  Structural basis for the reversible activation of a Rho protein by the bacterial toxin SopE.

Authors:  Gretel Buchwald; Andrea Friebel; Jorge E Galán; Wolf-Dietrich Hardt; Alfred Wittinghofer; Klaus Scheffzek
Journal:  EMBO J       Date:  2002-07-01       Impact factor: 11.598

Review 8.  Interplay of metal ions and urease.

Authors:  Eric L Carter; Nicholas Flugga; Jodi L Boer; Scott B Mulrooney; Robert P Hausinger
Journal:  Metallomics       Date:  2009       Impact factor: 4.526

9.  UreG, a chaperone in the urease assembly process, is an intrinsically unstructured GTPase that specifically binds Zn2+.

Authors:  Barbara Zambelli; Massimiliano Stola; Francesco Musiani; Kris De Vriendt; Bart Samyn; Bart Devreese; Jozef Van Beeumen; Paola Turano; Alexander Dikiy; Donald A Bryant; Stefano Ciurli
Journal:  J Biol Chem       Date:  2004-11-12       Impact factor: 5.157

10.  ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.

Authors:  Meytal Landau; Itay Mayrose; Yossi Rosenberg; Fabian Glaser; Eric Martz; Tal Pupko; Nir Ben-Tal
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

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  16 in total

1.  Function of UreB in Klebsiella aerogenes urease.

Authors:  Eric L Carter; Jodi L Boer; Mark A Farrugia; Nicholas Flugga; Christopher L Towns; Robert P Hausinger
Journal:  Biochemistry       Date:  2011-10-06       Impact factor: 3.162

2.  Unraveling the Helicobacter pylori UreG zinc binding site using X-ray absorption spectroscopy (XAS) and structural modeling.

Authors:  Vlad Martin-Diaconescu; Matteo Bellucci; Francesco Musiani; Stefano Ciurli; Michael J Maroney
Journal:  J Biol Inorg Chem       Date:  2011-11-09       Impact factor: 3.358

3.  Assembly of preactivation complex for urease maturation in Helicobacter pylori: crystal structure of UreF-UreH protein complex.

Authors:  Yu Hang Fong; Ho Chun Wong; Chi Pang Chuck; Yu Wai Chen; Hongzhe Sun; Kam-Bo Wong
Journal:  J Biol Chem       Date:  2011-10-19       Impact factor: 5.157

4.  Intrinsic disorder and metal binding in UreG proteins from Archae hyperthermophiles: GTPase enzymes involved in the activation of Ni(II) dependent urease.

Authors:  Manfredi Miraula; Stefano Ciurli; Barbara Zambelli
Journal:  J Biol Inorg Chem       Date:  2015-04-07       Impact factor: 3.358

5.  Klebsiella aerogenes UreF: identification of the UreG binding site and role in enhancing the fidelity of urease activation.

Authors:  Jodi L Boer; Robert P Hausinger
Journal:  Biochemistry       Date:  2012-03-06       Impact factor: 3.162

6.  Structure of the UreD-UreF-UreG-UreE complex in Helicobacter pylori: a model study.

Authors:  Francesco Biagi; Francesco Musiani; Stefano Ciurli
Journal:  J Biol Inorg Chem       Date:  2013-05-10       Impact factor: 3.358

Review 7.  Cofactor biosynthesis through protein post-translational modification.

Authors:  Erik T Yukl; Carrie M Wilmot
Journal:  Curr Opin Chem Biol       Date:  2012-03-02       Impact factor: 8.822

8.  Analysis of a soluble (UreD:UreF:UreG)2 accessory protein complex and its interactions with Klebsiella aerogenes urease by mass spectrometry.

Authors:  Mark A Farrugia; Linjie Han; Yueyang Zhong; Jodi L Boer; Brandon T Ruotolo; Robert P Hausinger
Journal:  J Am Soc Mass Spectrom       Date:  2013-09       Impact factor: 3.109

Review 9.  Biosynthesis of the urease metallocenter.

Authors:  Mark A Farrugia; Lee Macomber; Robert P Hausinger
Journal:  J Biol Chem       Date:  2013-03-28       Impact factor: 5.157

10.  Nickel binding properties of Helicobacter pylori UreF, an accessory protein in the nickel-based activation of urease.

Authors:  Barbara Zambelli; Andrea Berardi; Vlad Martin-Diaconescu; Luca Mazzei; Francesco Musiani; Michael J Maroney; Stefano Ciurli
Journal:  J Biol Inorg Chem       Date:  2013-11-30       Impact factor: 3.358

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