Literature DB >> 12351820

Substructure solution with SHELXD.

Thomas R Schneider1, George M Sheldrick.   

Abstract

Iterative dual-space direct methods based on phase refinement in reciprocal space and peak picking in real space are able to locate relatively large numbers of anomalous scatterers efficiently from MAD or SAD data. Truncation of the data at a particular resolution, typically in the range 3.0-3.5 A, can be critical to success. The efficiency can be improved by roughly an order of magnitude by Patterson-based seeding instead of starting from random phases or sites; Patterson superposition methods also provide useful validation. The program SHELXD implementing this approach is available as part of the SHELX package.

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Year:  2002        PMID: 12351820     DOI: 10.1107/s0907444902011678

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  825 in total

1.  Crystal structure of the novel PaiB transcriptional regulator from Geobacillus stearothermophilus.

Authors:  E V Filippova; J S Brunzelle; M E Cuff; H Li; A Joachimiak; W F Anderson
Journal:  Proteins       Date:  2011-06-01

2.  Crystal structure of the novel PaiA N-acetyltransferase from Thermoplasma acidophilum involved in the negative control of sporulation and degradative enzyme production.

Authors:  E V Filippova; L Shuvalova; G Minasov; O Kiryukhina; Y Zhang; S Clancy; I Radhakrishnan; A Joachimiak; W F Anderson
Journal:  Proteins       Date:  2011-06-01

3.  Structure and mechanism of the diiron benzoyl-coenzyme A epoxidase BoxB.

Authors:  Liv J Rather; Tobias Weinert; Ulrike Demmer; Eckhard Bill; Wael Ismail; Georg Fuchs; Ulrich Ermler
Journal:  J Biol Chem       Date:  2011-06-01       Impact factor: 5.157

4.  Structural insight into mechanism and diverse substrate selection strategy of L-ribulokinase.

Authors:  Rakhi Agarwal; Stephen K Burley; Subramanyam Swaminathan
Journal:  Proteins       Date:  2011-11-09

5.  Crystal structure of human mitoNEET reveals distinct groups of iron sulfur proteins.

Authors:  Jinzhong Lin; Tao Zhou; Keqiong Ye; Jinfeng Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-31       Impact factor: 11.205

6.  Structure of the archaeal Kae1/Bud32 fusion protein MJ1130: a model for the eukaryotic EKC/KEOPS subcomplex.

Authors:  Arnaud Hecker; Raffaele Lopreiato; Marc Graille; Bruno Collinet; Patrick Forterre; Domenico Libri; Herman van Tilbeurgh
Journal:  EMBO J       Date:  2008-09-03       Impact factor: 11.598

7.  Crystal structure of a novel Sm-like protein of putative cyanophage origin at 2.60 A resolution.

Authors:  Debanu Das; Piotr Kozbial; Herbert L Axelrod; Mitchell D Miller; Daniel McMullan; S Sri Krishna; Polat Abdubek; Claire Acosta; Tamara Astakhova; Prasad Burra; Dennis Carlton; Connie Chen; Hsiu-Ju Chiu; Thomas Clayton; Marc C Deller; Lian Duan; Ylva Elias; Marc-André Elsliger; Dustin Ernst; Carol Farr; Julie Feuerhelm; Anna Grzechnik; Slawomir K Grzechnik; Joanna Hale; Gye Won Han; Lukasz Jaroszewski; Kevin K Jin; Hope A Johnson; Heath E Klock; Mark W Knuth; Abhinav Kumar; David Marciano; Andrew T Morse; Kevin D Murphy; Edward Nigoghossian; Amanda Nopakun; Linda Okach; Silvya Oommachen; Jessica Paulsen; Christina Puckett; Ron Reyes; Christopher L Rife; Natasha Sefcovic; Sebastian Sudek; Henry Tien; Christine Trame; Christina V Trout; Henry van den Bedem; Dana Weekes; Aprilfawn White; Qingping Xu; Keith O Hodgson; John Wooley; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson
Journal:  Proteins       Date:  2009-05-01

8.  Multifunctionality and mechanism of ligand binding in a mosquito antiinflammatory protein.

Authors:  Eric Calvo; Ben J Mans; José M C Ribeiro; John F Andersen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-20       Impact factor: 11.205

9.  Crystal structure of the incretin-bound extracellular domain of a G protein-coupled receptor.

Authors:  Christoph Parthier; Martin Kleinschmidt; Piotr Neumann; Rainer Rudolph; Susanne Manhart; Dagmar Schlenzig; Jörg Fanghänel; Jens-Ulrich Rahfeld; Hans-Ulrich Demuth; Milton T Stubbs
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-21       Impact factor: 11.205

10.  Functional Profiling and Crystal Structures of Isothiocyanate Hydrolases Found in Gut-Associated and Plant-Pathogenic Bacteria.

Authors:  Tijs J M van den Bosch; Kemin Tan; Andrzej Joachimiak; Cornelia U Welte
Journal:  Appl Environ Microbiol       Date:  2018-07-02       Impact factor: 4.792

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