Literature DB >> 22387133

Cofactor biosynthesis through protein post-translational modification.

Erik T Yukl1, Carrie M Wilmot.   

Abstract

Post-translational modifications of amino acids can be used to generate novel cofactors capable of chemistries inaccessible to conventional amino acid side chains. The biosynthesis of these sites often requires one or more enzyme or protein accessory factors, the functions of which are quite diverse and often difficult to isolate in cases where multiple enzymes are involved. Herein is described the current knowledge of the biosynthesis of urease and nitrile hydratase metal centers, pyrroloquinoline quinone, hypusine, and tryptophan tryptophylquinone cofactors along with the most recent work elucidating the functions of individual accessory factors in these systems. These examples showcase the breadth and diversity of this continually expanding field.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22387133      PMCID: PMC3349990          DOI: 10.1016/j.cbpa.2012.02.010

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  37 in total

1.  Factors required for the catalytic reaction of PqqC/D which produces pyrroloquinoline quinone.

Authors:  Hirohide Toyama; Eriko Nishibayashi; Megumi Saeki; Osao Adachi; Kazunobu Matsushita
Journal:  Biochem Biophys Res Commun       Date:  2007-01-08       Impact factor: 3.575

Review 2.  Cyanobacterial alkane biosynthesis further expands the catalytic repertoire of the ferritin-like 'di-iron-carboxylate' proteins.

Authors:  Carsten Krebs; J Martin Bollinger; Squire J Booker
Journal:  Curr Opin Chem Biol       Date:  2011-04       Impact factor: 8.822

3.  Characterization of the Klebsiella aerogenes urease accessory protein UreD in fusion with the maltose binding protein.

Authors:  Eric L Carter; Robert P Hausinger
Journal:  J Bacteriol       Date:  2010-03-05       Impact factor: 3.490

4.  In crystallo posttranslational modification within a MauG/pre-methylamine dehydrogenase complex.

Authors:  Lyndal M R Jensen; Ruslan Sanishvili; Victor L Davidson; Carrie M Wilmot
Journal:  Science       Date:  2010-03-12       Impact factor: 47.728

5.  Structural studies of mutant forms of the PQQ-forming enzyme PqqC in the presence of product and substrate.

Authors:  Sandra Puehringer; Jordan RoseFigura; Moritz Metlitzky; Hirohide Toyama; Judith P Klinman; Robert Schwarzenbacher
Journal:  Proteins       Date:  2010-08-15

6.  A catalytic di-heme bis-Fe(IV) intermediate, alternative to an Fe(IV)=O porphyrin radical.

Authors:  Xianghui Li; Rong Fu; Sheeyong Lee; Carsten Krebs; Victor L Davidson; Aimin Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-18       Impact factor: 11.205

7.  Evidence for conformational changes in the yeast deoxyhypusine hydroxylase Lia1 upon iron displacement from its active site.

Authors:  Veridiana S P Cano; Francisco Javier Medrano; Myung Hee Park; Sandro R Valentini
Journal:  Amino Acids       Date:  2009-12-03       Impact factor: 3.520

8.  Xanthomonas campestris PqqD in the pyrroloquinoline quinone biosynthesis operon adopts a novel saddle-like fold that possibly serves as a PQQ carrier.

Authors:  Tung-Yi Tsai; Chao-Yu Yang; Hui-Ling Shih; Andrew H-J Wang; Shan-Ho Chou
Journal:  Proteins       Date:  2009-09

9.  Heme iron nitrosyl complex of MauG reveals an efficient redox equilibrium between hemes with only one heme exclusively binding exogenous ligands.

Authors:  Rong Fu; Fange Liu; Victor L Davidson; Aimin Liu
Journal:  Biochemistry       Date:  2009-12-15       Impact factor: 3.162

10.  Pyrroloquinoline quinone biogenesis: demonstration that PqqE from Klebsiella pneumoniae is a radical S-adenosyl-L-methionine enzyme.

Authors:  Stephen R Wecksler; Stefan Stoll; Ha Tran; Olafur T Magnusson; Shu-Pao Wu; David King; R David Britt; Judith P Klinman
Journal:  Biochemistry       Date:  2009-10-27       Impact factor: 3.162

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  8 in total

Review 1.  Activation of dioxygen by copper metalloproteins and insights from model complexes.

Authors:  David A Quist; Daniel E Diaz; Jeffrey J Liu; Kenneth D Karlin
Journal:  J Biol Inorg Chem       Date:  2016-12-05       Impact factor: 3.358

Review 2.  Intrigues and intricacies of the biosynthetic pathways for the enzymatic quinocofactors: PQQ, TTQ, CTQ, TPQ, and LTQ.

Authors:  Judith P Klinman; Florence Bonnot
Journal:  Chem Rev       Date:  2013-12-18       Impact factor: 60.622

Review 3.  MauG: a di-heme enzyme required for methylamine dehydrogenase maturation.

Authors:  Carrie M Wilmot; Erik T Yukl
Journal:  Dalton Trans       Date:  2012-10-22       Impact factor: 4.390

4.  Construction of a subunit-fusion nitrile hydratase and discovery of an innovative metal ion transfer pattern.

Authors:  Yuanyuan Xia; Wenjing Cui; Zhongmei Liu; Li Zhou; Youtian Cui; Michihiko Kobayashi; Zhemin Zhou
Journal:  Sci Rep       Date:  2016-01-12       Impact factor: 4.379

5.  Overexpression and characterization of two types of nitrile hydratases from Rhodococcus rhodochrous J1.

Authors:  Yao Lan; Xiaohuan Zhang; Zhongmei Liu; Li Zhou; Ruihua Shen; Xianping Zhong; Wenjing Cui; Zhemin Zhou
Journal:  PLoS One       Date:  2017-06-23       Impact factor: 3.240

6.  Functional and structural characterization of a flavoprotein monooxygenase essential for biogenesis of tryptophylquinone cofactor.

Authors:  Toshinori Oozeki; Tadashi Nakai; Kazuki Kozakai; Kazuki Okamoto; Shun'ichi Kuroda; Kazuo Kobayashi; Katsuyuki Tanizawa; Toshihide Okajima
Journal:  Nat Commun       Date:  2021-02-10       Impact factor: 14.919

7.  Extending enzyme molecular recognition with an expanded amino acid alphabet.

Authors:  Claire L Windle; Katie J Simmons; James R Ault; Chi H Trinh; Adam Nelson; Arwen R Pearson; Alan Berry
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-14       Impact factor: 11.205

8.  Functional Expression and Characterization of a Panel of Cobalt and Iron-Dependent Nitrile Hydratases.

Authors:  Birgit Grill; Maximilian Glänzer; Helmut Schwab; Kerstin Steiner; Daniel Pienaar; Dean Brady; Kai Donsbach; Margit Winkler
Journal:  Molecules       Date:  2020-05-28       Impact factor: 4.411

  8 in total

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