Literature DB >> 22313286

Quantification of transcription factor binding in cell extracts using an electrochemical, structure-switching biosensor.

Andrew J Bonham1, Kuangwen Hsieh, B Scott Ferguson, Alexis Vallée-Bélisle, Francesco Ricci, H Tom Soh, Kevin W Plaxco.   

Abstract

Transcription factor expression levels, which sensitively reflect cellular development and disease state, are typically monitored via cumbersome, reagent-intensive assays that require relatively large quantities of cells. Here, we demonstrate a simple, quantitative approach to their detection based on a simple, electrochemical sensing platform. This sensor sensitively and quantitatively detects its target transcription factor in complex media (e.g., 250 μg/mL crude nuclear extracts) in a convenient, low-reagent process requiring only 10 μL of sample. Our approach thus appears a promising means of monitoring transcription factor levels.

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Year:  2012        PMID: 22313286      PMCID: PMC3523731          DOI: 10.1021/ja2115663

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  22 in total

1.  Quantitation of the RNA polymerase II transcription machinery in yeast.

Authors:  T Borggrefe; R Davis; A Bareket-Samish; R D Kornberg
Journal:  J Biol Chem       Date:  2001-10-08       Impact factor: 5.157

2.  Assessing self-renewal and differentiation in human embryonic stem cell lines.

Authors:  Jingli Cai; Jia Chen; Ying Liu; Takumi Miura; Yongquan Luo; Jeanne F Loring; William J Freed; Mahendra S Rao; Xianmin Zeng
Journal:  Stem Cells       Date:  2005-11-17       Impact factor: 6.277

3.  Label free analysis of transcription factors using microcantilever arrays.

Authors:  François Huber; Martin Hegner; Christoph Gerber; Hans-Joachim Güntherodt; Hans Peter Lang
Journal:  Biosens Bioelectron       Date:  2005-08-30       Impact factor: 10.618

4.  An electronic, aptamer-based small-molecule sensor for the rapid, label-free detection of cocaine in adulterated samples and biological fluids.

Authors:  Brian R Baker; Rebecca Y Lai; McCall S Wood; Elaine H Doctor; Alan J Heeger; Kevin W Plaxco
Journal:  J Am Chem Soc       Date:  2006-03-15       Impact factor: 15.419

5.  Effect of molecular crowding on the response of an electrochemical DNA sensor.

Authors:  Francesco Ricci; Rebecca Y Lai; Alan J Heeger; Kevin W Plaxco; James J Sumner
Journal:  Langmuir       Date:  2007-05-09       Impact factor: 3.882

6.  Electrical detection of TATA binding protein at DNA-modified microelectrodes.

Authors:  Alon A Gorodetsky; Ali Ebrahim; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2008-02-14       Impact factor: 15.419

7.  UNAFold: software for nucleic acid folding and hybridization.

Authors:  Nicholas R Markham; Michael Zuker
Journal:  Methods Mol Biol       Date:  2008

8.  Optimization of electrochemical aptamer-based sensors via optimization of probe packing density and surface chemistry.

Authors:  Ryan J White; Noelle Phares; Arica A Lubin; Yi Xiao; Kevin W Plaxco
Journal:  Langmuir       Date:  2008-08-09       Impact factor: 3.882

9.  Transcription factor beacons for the quantitative detection of DNA binding activity.

Authors:  Alexis Vallée-Bélisle; Andrew J Bonham; Norbert O Reich; Francesco Ricci; Kevin W Plaxco
Journal:  J Am Chem Soc       Date:  2011-08-12       Impact factor: 15.419

10.  JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.

Authors:  Jan Christian Bryne; Eivind Valen; Man-Hung Eric Tang; Troels Marstrand; Ole Winther; Isabelle da Piedade; Anders Krogh; Boris Lenhard; Albin Sandelin
Journal:  Nucleic Acids Res       Date:  2007-11-15       Impact factor: 16.971

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  16 in total

Review 1.  Bioapplications of DNA nanotechnology at the solid-liquid interface.

Authors:  Wenjing Wang; Sha Yu; Shan Huang; Sai Bi; Heyou Han; Jian-Rong Zhang; Yi Lu; Jun-Jie Zhu
Journal:  Chem Soc Rev       Date:  2019-09-16       Impact factor: 54.564

2.  Intraduplex DNA-mediated electrochemistry of covalently tethered redox-active reporters.

Authors:  Catrina G Pheeney; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2013-09-30       Impact factor: 15.419

3.  Quantitation of femtomolar protein levels via direct readout with the electrochemical proximity assay.

Authors:  Jiaming Hu; Tanyu Wang; Joonyul Kim; Curtis Shannon; Christopher J Easley
Journal:  J Am Chem Soc       Date:  2012-04-10       Impact factor: 15.419

4.  Nanostructured gold dsDNA sensor for early detection of breast cancer by beta protein 1 (BP1).

Authors:  Wanda I Pérez; Yarelys Soto; Jaime E Ramirez-Vick; Enrique Meléndez
Journal:  J Electroanal Chem (Lausanne)       Date:  2015-08-15       Impact factor: 4.464

5.  Maximizing the Signal Gain of Electrochemical-DNA Sensors.

Authors:  Philippe Dauphin-Ducharme; Kevin W Plaxco
Journal:  Anal Chem       Date:  2016-11-22       Impact factor: 6.986

6.  Molecular beacon aptamers for direct and universal quantitation of recombinant proteins from cell lysates.

Authors:  Xiaohong Tan; Weijun Chen; Shun Lu; Zhi Zhu; Tao Chen; Guizhi Zhu; Mingxu You; Weihong Tan
Journal:  Anal Chem       Date:  2012-09-17       Impact factor: 6.986

7.  A Modular, DNA-Based Beacon for Single-Step Fluorescence Detection of Antibodies and Other Proteins.

Authors:  Simona Ranallo; Marianna Rossetti; Kevin W Plaxco; Alexis Vallée-Bélisle; Francesco Ricci
Journal:  Angew Chem Int Ed Engl       Date:  2015-09-04       Impact factor: 15.336

8.  Multiplexed electrochemistry of DNA-bound metalloproteins.

Authors:  Catrina G Pheeney; Anna R Arnold; Michael A Grodick; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2013-07-30       Impact factor: 15.419

9.  Reagentless, ratiometric electrochemical DNA sensors with improved robustness and reproducibility.

Authors:  Yan Du; Byung Joon Lim; Bingling Li; Yu Sherry Jiang; Jonathan L Sessler; Andrew D Ellington
Journal:  Anal Chem       Date:  2014-07-18       Impact factor: 6.986

10.  Detecting transforming growth factor-β release from liver cells using an aptasensor integrated with microfluidics.

Authors:  Zimple Matharu; Dipali Patel; Yandong Gao; Amranul Haque; Qing Zhou; Alexander Revzin
Journal:  Anal Chem       Date:  2014-08-22       Impact factor: 6.986

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