Literature DB >> 12163068

Engineering and design of ligand-induced conformational change in proteins.

Laura S Mizoue1, Walter J Chazin.   

Abstract

The ability to manipulate ligand-induced conformational change, although representing a major challenge to the protein engineer, is an essential end point in efforts to produce novel functional proteins for biotechnology and therapeutic applications. Progress towards this goal requires determining not only what factors control the fold and stability of a protein, but also how ligand binding alters the complex conformational/energetic landscape. Important strides are being made on several fronts, including understanding the origin of long-range effects and allosteric structural mechanisms, using both experimental and theoretical approaches.

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Year:  2002        PMID: 12163068     DOI: 10.1016/s0959-440x(02)00348-2

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  13 in total

1.  Stabilizing the open conformation of the integrin headpiece with a glycan wedge increases affinity for ligand.

Authors:  Bing-Hao Luo; Timothy A Springer; Junichi Takagi
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-25       Impact factor: 11.205

2.  Engineering biosensors with extended, narrowed, or arbitrarily edited dynamic range.

Authors:  Alexis Vallée-Bélisle; Francesco Ricci; Kevin W Plaxco
Journal:  J Am Chem Soc       Date:  2012-02-06       Impact factor: 15.419

3.  The change of protein intradomain mobility on ligand binding: is it a commonly observed phenomenon?

Authors:  Semen O Yesylevskyy; Valery N Kharkyanen; Alexander P Demchenko
Journal:  Biophys J       Date:  2006-07-28       Impact factor: 4.033

4.  Thermodynamic basis for the optimization of binding-induced biomolecular switches and structure-switching biosensors.

Authors:  Alexis Vallée-Bélisle; Francesco Ricci; Kevin W Plaxco
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-05       Impact factor: 11.205

5.  Collisional unfolding of multiprotein complexes reveals cooperative stabilization upon ligand binding.

Authors:  Shuai Niu; Brandon T Ruotolo
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

Review 6.  Structure-switching biosensors: inspired by Nature.

Authors:  Alexis Vallée-Bélisle; Kevin W Plaxco
Journal:  Curr Opin Struct Biol       Date:  2010-06-02       Impact factor: 6.809

7.  Rational design of a conformation-switchable Ca2+- and Tb3+-binding protein without the use of multiple coupled metal-binding sites.

Authors:  Shunyi Li; Wei Yang; Anna W Maniccia; Doyle Barrow; Harianto Tjong; Huan-Xiang Zhou; Jenny J Yang
Journal:  FEBS J       Date:  2008-09-10       Impact factor: 5.542

8.  Using distal-site mutations and allosteric inhibition to tune, extend, and narrow the useful dynamic range of aptamer-based sensors.

Authors:  Alessandro Porchetta; Alexis Vallée-Bélisle; Kevin W Plaxco; Francesco Ricci
Journal:  J Am Chem Soc       Date:  2012-12-13       Impact factor: 15.419

9.  Use of sequence duplication to engineer a ligand-triggered, long-distance molecular switch in T4 lysozyme.

Authors:  Mohammad S Yousef; Walter A Baase; Brian W Matthews
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-30       Impact factor: 11.205

10.  Reversible pH-controlled DNA-binding peptide nanotweezers: an in-silico study.

Authors:  Gaurav Sharma; Kaushal Rege; David E Budil; Martin L Yarmush; Constantinos Mavroidis
Journal:  Int J Nanomedicine       Date:  2008
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