Literature DB >> 20622983

2D IR photon echo spectroscopy reveals hydrogen bond dynamics of aromatic nitriles.

Ayanjeet Ghosh1, Amanda Remorino, Matthew J Tucker, Robin M Hochstrasser.   

Abstract

The CN vibrations of two aromatic nitriles, cinnamonitrile, PhCH=CH-CN and benzonitrile, PhCN, representative of components of common enzyme inhibitors, are examined by two dimensional infrared spectroscopy. In methanol, these spectra display cross peaks between the two CN components whose evolution exposes the few picosecond (4.5 ps for CIN and 5.3 ps for BN) equilibrium dynamics of hydrogen bond making and breaking. The main features of the 2D IR spectra are reproduced by simulations only with exchange incorporated. The lowest free energy state is the non-hydrogen bonded form. Both alkyl and aryl nitriles have now shown this picosecond exchange process.

Entities:  

Year:  2009        PMID: 20622983      PMCID: PMC2901127          DOI: 10.1016/j.cplett.2008.12.094

Source DB:  PubMed          Journal:  Chem Phys Lett        ISSN: 0009-2614            Impact factor:   2.328


  30 in total

1.  A new method for determining the local environment and orientation of individual side chains of membrane-binding peptides.

Authors:  Matthew J Tucker; Zelleka Getahun; Vikas Nanda; William F DeGrado; Feng Gai
Journal:  J Am Chem Soc       Date:  2004-04-28       Impact factor: 15.419

2.  Multidimensional infrared spectroscopy of the N-H bond motions in formamide.

Authors:  Jaehun Park; Jeong-Hyon Ha; Robin M Hochstrasser
Journal:  J Chem Phys       Date:  2004-10-15       Impact factor: 3.488

3.  Comparison of linear and 2D IR spectra in the presence of fast exchange.

Authors:  Yung Sam Kim; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2006-05-04       Impact factor: 2.991

4.  The 2D IR responses of amide and carbonyl modes in water cannot be described by Gaussian frequency fluctuations.

Authors:  Yung Sam Kim; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2007-08-01       Impact factor: 2.991

5.  2D infrared chemical exchange spectroscopy of ultrafast isomerizations.

Authors:  Christoph Scheurer; Tobias Steinel
Journal:  Chemphyschem       Date:  2007-03-12       Impact factor: 3.102

6.  Nitrile and thiocyanate IR probes: molecular dynamics simulation studies.

Authors:  Kwang-Im Oh; Jun-Ho Choi; Joo-Hyun Lee; Jae-Beom Han; Hochan Lee; Minhaeng Cho
Journal:  J Chem Phys       Date:  2008-04-21       Impact factor: 3.488

7.  Determining transition-state geometries in liquids using 2D-IR.

Authors:  James F Cahoon; Karma R Sawyer; Jacob P Schlegel; Charles B Harris
Journal:  Science       Date:  2008-03-28       Impact factor: 47.728

8.  Ultrafast dynamics of solute-solvent complexation observed at thermal equilibrium in real time.

Authors:  Junrong Zheng; Kyungwon Kwak; John Asbury; Xin Chen; Ivan R Piletic; M D Fayer
Journal:  Science       Date:  2005-08-04       Impact factor: 47.728

9.  Non-Gaussian statistics of amide I mode frequency fluctuation of N-methylacetamide in methanol solution: linear and nonlinear vibrational spectra.

Authors:  Kijeong Kwac; Hochan Lee; Minhaeng Cho
Journal:  J Chem Phys       Date:  2004-01-15       Impact factor: 3.488

10.  Nitrile groups as vibrational probes: calculations of the CN infrared absorption line shape of acetonitrile in water and tetrahydrofuran.

Authors:  Beth A Lindquist; Steven A Corcelli
Journal:  J Phys Chem B       Date:  2008-04-26       Impact factor: 2.991

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  18 in total

1.  Selective incorporation of nitrile-based infrared probes into proteins via cysteine alkylation.

Authors:  Hyunil Jo; Robert M Culik; Ivan V Korendovych; William F Degrado; Feng Gai
Journal:  Biochemistry       Date:  2010-11-17       Impact factor: 3.162

2.  Site-Specific Spectroscopic Reporters of the Local Electric Field, Hydration, Structure, and Dynamics of Biomolecules.

Authors:  Matthias M Waegele; Robert M Culik; Feng Gai
Journal:  J Phys Chem Lett       Date:  2011-09-23       Impact factor: 6.475

3.  2D IR spectroscopy reveals the role of water in the binding of channel-blocking drugs to the influenza M2 channel.

Authors:  Ayanjeet Ghosh; Jun Wang; Yurii S Moroz; Ivan V Korendovych; Martin Zanni; William F DeGrado; Feng Gai; Robin M Hochstrasser
Journal:  J Chem Phys       Date:  2014-06-21       Impact factor: 3.488

4.  2D IR cross peaks reveal hydrogen-deuterium exchange with single residue specificity.

Authors:  Emily B Dunkelberger; Ann Marie Woys; Martin T Zanni
Journal:  J Phys Chem B       Date:  2013-05-23       Impact factor: 2.991

5.  Computational Modeling of the Nitrile Stretching Vibration of 5-Cyanoindole in Water.

Authors:  Matthias M Waegele; Feng Gai
Journal:  J Phys Chem Lett       Date:  2010-02-01       Impact factor: 6.475

Review 6.  Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Authors:  Ayanjeet Ghosh; Joshua S Ostrander; Martin T Zanni
Journal:  Chem Rev       Date:  2017-01-06       Impact factor: 60.622

Review 7.  Site-specific infrared probes of proteins.

Authors:  Jianqiang Ma; Ileana M Pazos; Wenkai Zhang; Robert M Culik; Feng Gai
Journal:  Annu Rev Phys Chem       Date:  2015-01-12       Impact factor: 12.703

8.  Quantum Beats and Coherence Decay in Degenerate States Split by Solvation.

Authors:  Lev Chuntonov; Daniel G Kuroda; Ayanjeet Ghosh; Jianqiang Ma; Robin M Hochstrasser
Journal:  J Phys Chem Lett       Date:  2013-06-06       Impact factor: 6.475

9.  Solute's perspective on how trimethylamine oxide, urea, and guanidine hydrochloride affect water's hydrogen bonding ability.

Authors:  Ileana M Pazos; Feng Gai
Journal:  J Phys Chem B       Date:  2012-10-09       Impact factor: 2.991

10.  Applications of 2D IR spectroscopy to peptides, proteins, and hydrogen-bond dynamics.

Authors:  Yung Sam Kim; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2009-06-18       Impact factor: 2.991

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