Literature DB >> 19351162

Applications of 2D IR spectroscopy to peptides, proteins, and hydrogen-bond dynamics.

Yung Sam Kim1, Robin M Hochstrasser.   

Abstract

Following a survey of 2D IR principles, this article describes recent experiments on the hydrogen-bond dynamics of small ions, amide-I modes, nitrile probes, peptides, reverse transcriptase inhibitors, and amyloid fibrils.

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Year:  2009        PMID： 19351162      PMCID： PMC2845308          DOI： 10.1021/jp8113978

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN： 1520-5207            Impact factor:   2.991


  120 in total

1.  Effects of ion atmosphere on hydrogen-bond dynamics in aqueous electrolyte solutions

Authors: 
Journal:  Phys Rev Lett       Date:  2000-07-24       Impact factor: 9.161

2.  Femtosecond infrared spectroscopy of bacteriorhodopsin chromophore isomerization.

Authors:  Johannes Herbst; Karsten Heyne; Rolf Diller
Journal:  Science       Date:  2002-08-02       Impact factor: 47.728

Review 3.  Ultrafast vibrational dynamics of hydrogen bonds in the condensed phase.

Authors:  Erik T J Nibbering; Thomas Elsaesser
Journal:  Chem Rev       Date:  2004-04       Impact factor: 60.622

4.  Chemical exchange 2D IR of hydrogen-bond making and breaking.

Authors:  Yung Sam Kim; Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-22       Impact factor: 11.205

5.  Picosecond dynamics of a membrane protein revealed by 2D IR.

Authors:  Prabuddha Mukherjee; Itamar Kass; Isaiah T Arkin; Isaiah Arkin; Martin T Zanni
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-27       Impact factor: 11.205

6.  Proton relay reaction in green fluorescent protein (GFP): Polarization-resolved ultrafast vibrational spectroscopy of isotopically edited GFP.

Authors:  Deborah Stoner-Ma; Edward H Melief; Jérôme Nappa; Kate L Ronayne; Peter J Tonge; Stephen R Meech
Journal:  J Phys Chem B       Date:  2006-11-02       Impact factor: 2.991

7.  Determining transition-state geometries in liquids using 2D-IR.

Authors:  James F Cahoon; Karma R Sawyer; Jacob P Schlegel; Charles B Harris
Journal:  Science       Date:  2008-03-28       Impact factor: 47.728

8.  Conformations of N-acetyl-L-prolinamide by two-dimensional infrared spectroscopy.

Authors:  Soohwan Sul; Denis Karaiskaj; Ying Jiang; Nien-Hui Ge
Journal:  J Phys Chem B       Date:  2006-10-12       Impact factor: 2.991

9.  Ultrafast carbon-carbon single-bond rotational isomerization in room-temperature solution.

Authors:  Junrong Zheng; Kyungwon Kwak; Jia Xie; M D Fayer
Journal:  Science       Date:  2006-09-29       Impact factor: 47.728

10.  Crystal structure of human immunodeficiency virus type 1 reverse transcriptase complexed with double-stranded DNA at 3.0 A resolution shows bent DNA.

Authors:  A Jacobo-Molina; J Ding; R G Nanni; A D Clark; X Lu; C Tantillo; R L Williams; G Kamer; A L Ferris; P Clark
Journal:  Proc Natl Acad Sci U S A       Date:  1993-07-01       Impact factor: 11.205
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  61 in total

Review 1.  Spectroscopic studies of protein folding: linear and nonlinear methods.

Authors:  Arnaldo L Serrano; Matthias M Waegele; Feng Gai
Journal:  Protein Sci       Date:  2011-12-28       Impact factor: 6.725

2.  Design, synthesis, and photochemical validation of peptide linchpins containing the S,S-tetrazine phototrigger.

Authors:  Mohannad Abdo; Stephen P Brown; Joel R Courter; Matthew J Tucker; Robin M Hochstrasser; Amos B Smith
Journal:  Org Lett       Date:  2012-06-26       Impact factor: 6.005

3.  Site-Specific Spectroscopic Reporters of the Local Electric Field, Hydration, Structure, and Dynamics of Biomolecules.

Authors:  Matthias M Waegele; Robert M Culik; Feng Gai
Journal:  J Phys Chem Lett       Date:  2011-09-23       Impact factor: 6.475

4.  Intrinsic structural heterogeneity and long-term maturation of amyloid β peptide fibrils.

Authors:  Jianqiang Ma; Hiroaki Komatsu; Yung Sam Kim; Liu Liu; Robin M Hochstrasser; Paul H Axelsen
Journal:  ACS Chem Neurosci       Date:  2013-06-12       Impact factor: 4.418

5.  Residue-specific structural kinetics of proteins through the union of isotope labeling, mid-IR pulse shaping, and coherent 2D IR spectroscopy.

Authors:  Chris T Middleton; Ann Marie Woys; Sudipta S Mukherjee; Martin T Zanni
Journal:  Methods       Date:  2010-05-22       Impact factor: 3.608

6.  2D IR provides evidence for mobile water molecules in beta-amyloid fibrils.

Authors:  Yung Sam Kim; Liu Liu; Paul H Axelsen; Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-08       Impact factor: 11.205

7.  2D IR spectroscopy reveals the role of water in the binding of channel-blocking drugs to the influenza M2 channel.

Authors:  Ayanjeet Ghosh; Jun Wang; Yurii S Moroz; Ivan V Korendovych; Martin Zanni; William F DeGrado; Feng Gai; Robin M Hochstrasser
Journal:  J Chem Phys       Date:  2014-06-21       Impact factor: 3.488

8.  Structural disorder of folded proteins: isotope-edited 2D IR spectroscopy and Markov state modeling.

Authors:  Carlos R Baiz; Andrei Tokmakoff
Journal:  Biophys J       Date:  2015-04-07       Impact factor: 4.033

9.  Coordination to lanthanide ions distorts binding site conformation in calmodulin.

Authors:  Sean C Edington; Andrea Gonzalez; Thomas R Middendorf; D Brent Halling; Richard W Aldrich; Carlos R Baiz
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-15       Impact factor: 11.205

10.  A strongly absorbing class of non-natural labels for probing protein electrostatics and solvation with FTIR and 2D IR spectroscopies.

Authors:  Ann Marie Woys; Sudipta S Mukherjee; David R Skoff; Sean D Moran; Martin T Zanni
Journal:  J Phys Chem B       Date:  2013-04-15       Impact factor: 2.991
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