Literature DB >> 18369145

Determining transition-state geometries in liquids using 2D-IR.

James F Cahoon1, Karma R Sawyer, Jacob P Schlegel, Charles B Harris.   

Abstract

Many properties of chemical reactions are determined by the transition state connecting reactant and product, yet it is difficult to directly obtain any information about these short-lived structures in liquids. We show that two-dimensional infrared (2D-IR) spectroscopy can provide direct information about transition states by tracking the transformation of vibrational modes as a molecule crossed a transition state. We successfully monitored a simple chemical reaction, the fluxional rearrangement of Fe(CO)5, in which the exchange of axial and equatorial CO ligands causes an exchange of vibrational energy between the normal modes of the molecule. This energy transfer provides direct evidence regarding the time scale, transition state, and mechanism of the reaction.

Entities:  

Year:  2008        PMID: 18369145     DOI: 10.1126/science.1154041

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  14 in total

1.  Adding a dimension to the infrared spectra of interfaces using heterodyne detected 2D sum-frequency generation (HD 2D SFG) spectroscopy.

Authors:  Wei Xiong; Jennifer E Laaser; Randy D Mehlenbacher; Martin T Zanni
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-05       Impact factor: 11.205

2.  Simplified and economical 2D IR spectrometer design using a dual acousto-optic modulator.

Authors:  David R Skoff; Jennifer E Laaser; Sudipta S Mukherjee; Chris T Middleton; Martin T Zanni
Journal:  Chem Phys       Date:  2013-08-30       Impact factor: 2.348

3.  Testing for memory-free spectroscopic coordinates by 3D IR exchange spectroscopy.

Authors:  Joanna A Borek; Fivos Perakis; Peter Hamm
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-07       Impact factor: 11.205

4.  Water-induced relaxation of a degenerate vibration of guanidinium using 2D IR echo spectroscopy.

Authors:  Dmitriy Yu Vorobyev; Chun-Hung Kuo; Daniel G Kuroda; J Nathan Scott; Jane M Vanderkooi; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2010-03-04       Impact factor: 2.991

5.  Tuning Molecular Vibrational Energy Flow within an Aromatic Scaffold via Anharmonic Coupling.

Authors:  Andrew J Schmitz; Hari Datt Pandey; Farzaneh Chalyavi; Tianjiao Shi; Edward E Fenlon; Scott H Brewer; David M Leitner; Matthew J Tucker
Journal:  J Phys Chem A       Date:  2019-12-03       Impact factor: 2.781

6.  Applications of 2D IR spectroscopy to peptides, proteins, and hydrogen-bond dynamics.

Authors:  Yung Sam Kim; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2009-06-18       Impact factor: 2.991

7.  Equilibrium exchange processes of the aqueous tryptophan dipeptide.

Authors:  Sayan Bagchi; Adam K Charnley; Amos B Smith Iii; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2009-06-18       Impact factor: 2.991

Review 8.  Coherent multidimensional vibrational spectroscopy of biomolecules: concepts, simulations, and challenges.

Authors:  Wei Zhuang; Tomoyuki Hayashi; Shaul Mukamel
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

9.  Identification of arginine residues in peptides by 2D-IR echo spectroscopy.

Authors:  Ayanjeet Ghosh; Matthew J Tucker; Robin M Hochstrasser
Journal:  J Phys Chem A       Date:  2011-05-03       Impact factor: 2.781

10.  2D IR photon echo spectroscopy reveals hydrogen bond dynamics of aromatic nitriles.

Authors:  Ayanjeet Ghosh; Amanda Remorino; Matthew J Tucker; Robin M Hochstrasser
Journal:  Chem Phys Lett       Date:  2009-02-17       Impact factor: 2.328

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