Literature DB >> 20575541

Thymidylate synthase catalyzed H-transfers: two chapters in one tale.

Zhen Wang1, Amnon Kohen.   

Abstract

Examination of the nature of different bond activations along the same catalytic path is of general interest in chemistry and biology. In this report, we compare the physical nature of two sequential H-transfers in the same enzymatic reaction. Thymidylate synthase (TSase) catalyzes a complex reaction that involves many chemical transformations including two different C-H bond cleavages, a rate-limiting C-H-C hydride transfer and a non-rate-limiting C-H-O proton transfer. Although the large kinetic complexity imposes difficulties in studying the proton transfer catalyzed by TSase, we are able to experimentally extract the intrinsic kinetic isotope effects (KIEs) on both steps. In contrast with the hydride transfer, the intrinsic KIEs of the proton transfer are temperature dependent. The results are interpreted within the framework of the Marcus-like model. This interpretation suggests that TSase optimizes the donor-acceptor geometries for the slower and overall rate-limiting hydride transfer but not for the faster proton transfer.

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Year:  2010        PMID: 20575541      PMCID: PMC2912445          DOI: 10.1021/ja103010b

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  41 in total

Review 1.  Conformational dynamics along an enzymatic reaction pathway: thymidylate synthase, "the movie".

Authors:  Robert M Stroud; Janet S Finer-Moore
Journal:  Biochemistry       Date:  2003-01-21       Impact factor: 3.162

Review 2.  Lessons and conclusions from dissecting the mechanism of a bisubstrate enzyme: thymidylate synthase mutagenesis, function, and structure.

Authors:  Janet S Finer-Moore; Daniel V Santi; Robert M Stroud
Journal:  Biochemistry       Date:  2003-01-21       Impact factor: 3.162

3.  Tunneling and coupled motion in the Escherichia coli dihydrofolate reductase catalysis.

Authors:  R Steven Sikorski; Lin Wang; Kelli A Markham; P T Ravi Rajagopalan; Stephen J Benkovic; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2004-04-21       Impact factor: 15.419

4.  Coordinated effects of distal mutations on environmentally coupled tunneling in dihydrofolate reductase.

Authors:  Lin Wang; Nina M Goodey; Stephen J Benkovic; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-10       Impact factor: 11.205

5.  H-tunneling in the multiple H-transfers of the catalytic cycle of morphinone reductase and in the reductive half-reaction of the homologous pentaerythritol tetranitrate reductase.

Authors:  Jaswir Basran; Richard J Harris; Michael J Sutcliffe; Nigel S Scrutton
Journal:  J Biol Chem       Date:  2003-08-26       Impact factor: 5.157

6.  A 21st century revisionist's view at a turning point in enzymology.

Authors:  Zachary D Nagel; Judith P Klinman
Journal:  Nat Chem Biol       Date:  2009-08       Impact factor: 15.040

7.  Cysteine-catalyzed hydrogen isotope exchange at the 5 position of uridylic acid.

Authors:  Y Wataya; H Hayatsu; Y Kawazoe
Journal:  J Am Chem Soc       Date:  1972-12-13       Impact factor: 15.419

8.  Enzyme dynamics and hydrogen tunnelling in a thermophilic alcohol dehydrogenase.

Authors:  A Kohen; R Cannio; S Bartolucci; J P Klinman
Journal:  Nature       Date:  1999-06-03       Impact factor: 49.962

9.  Examination of enzymatic H-tunneling through kinetics and dynamics.

Authors:  Jigar N Bandaria; Christopher M Cheatum; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2009-07-29       Impact factor: 15.419

Review 10.  Hydrogen tunneling and protein motion in enzyme reactions.

Authors:  Sharon Hammes-Schiffer
Journal:  Acc Chem Res       Date:  2006-02       Impact factor: 22.384

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  20 in total

1.  A fast chemoenzymatic synthesis of [11C]-N5,N10-methylenetetrahydrofolate as a potential PET tracer for proliferating cells.

Authors:  Muhammad Saeed; Timothy J Tewson; Colbin E Erdahl; Amnon Kohen
Journal:  Nucl Med Biol       Date:  2012-02-01       Impact factor: 2.408

2.  Mechanism of the Swern oxidation: significant deviations from transition state theory.

Authors:  Thomas Giagou; Matthew P Meyer
Journal:  J Org Chem       Date:  2010-11-02       Impact factor: 4.354

3.  Structural and Kinetic Studies of Formate Dehydrogenase from Candida boidinii.

Authors:  Qi Guo; Lokesh Gakhar; Kyle Wickersham; Kevin Francis; Alexandra Vardi-Kilshtain; Dan T Major; Christopher M Cheatum; Amnon Kohen
Journal:  Biochemistry       Date:  2016-05-03       Impact factor: 3.162

4.  Examinations of the Chemical Step in Enzyme Catalysis.

Authors:  P Singh; Z Islam; A Kohen
Journal:  Methods Enzymol       Date:  2016-06-28       Impact factor: 1.600

5.  A remote mutation affects the hydride transfer by disrupting concerted protein motions in thymidylate synthase.

Authors:  Zhen Wang; Thelma Abeysinghe; Janet S Finer-Moore; Robert M Stroud; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2012-10-15       Impact factor: 15.419

6.  The general base in the thymidylate synthase catalyzed proton abstraction.

Authors:  Ananda K Ghosh; Zahidul Islam; Jonathan Krueger; Thelma Abeysinghe; Amnon Kohen
Journal:  Phys Chem Chem Phys       Date:  2015-12-14       Impact factor: 3.676

Review 7.  Relationship of femtosecond-picosecond dynamics to enzyme-catalyzed H-transfer.

Authors:  Christopher M Cheatum; Amnon Kohen
Journal:  Top Curr Chem       Date:  2013

8.  Activation of Two Sequential H-transfers in the Thymidylate Synthase Catalyzed Reaction.

Authors:  Zahidul Islam; Timothy S Strutzenberg; Ananda K Ghosh; Amnon Kohen
Journal:  ACS Catal       Date:  2015-09-02       Impact factor: 13.084

9.  Mg2+ binds to the surface of thymidylate synthase and affects hydride transfer at the interior active site.

Authors:  Zhen Wang; Paul J Sapienza; Thelma Abeysinghe; Calvin Luzum; Andrew L Lee; Janet S Finer-Moore; Robert M Stroud; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2013-05-10       Impact factor: 15.419

10.  Origins of Enzyme Catalysis: Experimental Findings for C-H Activation, New Models, and Their Relevance to Prevailing Theoretical Constructs.

Authors:  Judith P Klinman; Adam R Offenbacher; Shenshen Hu
Journal:  J Am Chem Soc       Date:  2017-12-15       Impact factor: 15.419

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