Literature DB >> 12941965

H-tunneling in the multiple H-transfers of the catalytic cycle of morphinone reductase and in the reductive half-reaction of the homologous pentaerythritol tetranitrate reductase.

Jaswir Basran1, Richard J Harris, Michael J Sutcliffe, Nigel S Scrutton.   

Abstract

The mechanism of flavin reduction in morphinone reductase (MR) and pentaerythritol tetranitrate (PETN) reductase, and flavin oxidation in MR, has been studied by stopped-flow and steady-state kinetic methods. The temperature dependence of the primary kinetic isotope effect for flavin reduction in MR and PETN reductase by nicotinamide coenzyme indicates that quantum mechanical tunneling plays a major role in hydride transfer. In PETN reductase, the kinetic isotope effect (KIE) is essentially independent of temperature in the experimentally accessible range, contrasting with strongly temperature-dependent reaction rates, consistent with a tunneling mechanism from the vibrational ground state of the reactive C-H/D bond. In MR, both the reaction rates and the KIE are dependent on temperature, and analysis using the Eyring equation suggests that hydride transfer has a major tunneling component, which, unlike PETN reductase, is gated by thermally induced vibrations in the protein. The oxidative half-reaction of MR is fully rate-limiting in steady-state turnover with the substrate 2-cyclohexenone and NADH at saturating concentrations. The KIE for hydride transfer from reduced flavin to the alpha/beta unsaturated bond of 2-cyclohexenone is independent of temperature, contrasting with strongly temperature-dependent reaction rates, again consistent with ground-state tunneling. A large solvent isotope effect (SIE) accompanies the oxidative half-reaction, which is also independent of temperature in the experimentally accessible range. Double isotope effects indicate that hydride transfer from the flavin N5 atom to 2-cyclohexenone, and the protonation of 2-cyclohexenone, are concerted and both the temperature-independent KIE and SIE suggest that this reaction also proceeds by ground-state quantum tunneling. Our results demonstrate the importance of quantum tunneling in the reduction of flavins by nicotinamide coenzymes. This is the first observation of (i) three H-nuclei in an enzymic reaction being transferred by tunneling and (ii) the utilization of both passive and active dynamics within the same native enzyme.

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Year:  2003        PMID: 12941965     DOI: 10.1074/jbc.M305983200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  18 in total

1.  Thermal-activated protein mobility and its correlation with catalysis in thermophilic alcohol dehydrogenase.

Authors:  Zhao-Xun Liang; Thomas Lee; Katheryn A Resing; Natalie G Ahn; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

2.  Insights into substrate specificity of geranylgeranyl reductases revealed by the structure of digeranylgeranylglycerophospholipid reductase, an essential enzyme in the biosynthesis of archaeal membrane lipids.

Authors:  Qingping Xu; Tadashi Eguchi; Irimpan I Mathews; Christopher L Rife; Hsiu-Ju Chiu; Carol L Farr; Julie Feuerhelm; Lukasz Jaroszewski; Heath E Klock; Mark W Knuth; Mitchell D Miller; Dana Weekes; Marc-André Elsliger; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson
Journal:  J Mol Biol       Date:  2010-10-01       Impact factor: 5.469

Review 3.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

4.  Contribution of flavin covalent linkage with histidine 99 to the reaction catalyzed by choline oxidase.

Authors:  Osbourne Quaye; Sharonda Cowins; Giovanni Gadda
Journal:  J Biol Chem       Date:  2009-04-27       Impact factor: 5.157

5.  Barrier compression and its contribution to both classical and quantum mechanical aspects of enzyme catalysis.

Authors:  Sam Hay; Linus O Johannissen; Michael J Sutcliffe; Nigel S Scrutton
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

Review 6.  H-transfers in Photosystem II: what can we learn from recent lessons in the enzyme community?

Authors:  Sam Hay; Nigel S Scrutton
Journal:  Photosynth Res       Date:  2008-09-03       Impact factor: 3.573

7.  Thymidylate synthase catalyzed H-transfers: two chapters in one tale.

Authors:  Zhen Wang; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2010-07-21       Impact factor: 15.419

8.  Structure-Based Insight into the Asymmetric Bioreduction of the C=C Double Bond of alpha,beta-Unsaturated Nitroalkenes by Pentaerythritol Tetranitrate Reductase.

Authors:  Helen S Toogood; Anna Fryszkowska; Victoria Hare; Karl Fisher; Anna Roujeinikova; David Leys; John M Gardiner; Gill M Stephens; Nigel S Scrutton
Journal:  Adv Synth Catal       Date:  2008-11-17       Impact factor: 5.837

9.  Mechanism-Informed Refinement Reveals Altered Substrate-Binding Mode for Catalytically Competent Nitroreductase.

Authors:  Warintra Pitsawong; Chad A Haynes; Ronald L Koder; David W Rodgers; Anne-Frances Miller
Journal:  Structure       Date:  2017-06-01       Impact factor: 5.006

10.  On the mechanism of a polyunsaturated fatty acid double bond isomerase from Propionibacterium acnes.

Authors:  Alena Liavonchanka; Markus G Rudolph; Kai Tittmann; Mats Hamberg; Ivo Feussner
Journal:  J Biol Chem       Date:  2009-01-21       Impact factor: 5.157

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