Literature DB >> 22319053

PPR2263, a DYW-Subgroup Pentatricopeptide repeat protein, is required for mitochondrial nad5 and cob transcript editing, mitochondrion biogenesis, and maize growth.

Davide Sosso1, Sylvie Mbelo, Vanessa Vernoud, Ghislaine Gendrot, Annick Dedieu, Pierre Chambrier, Myriam Dauzat, Laure Heurtevin, Virginie Guyon, Mizuki Takenaka, Peter M Rogowsky.   

Abstract

RNA editing plays an important role in organelle gene expression in various organisms, including flowering plants, changing the nucleotide information at precise sites. Here, we present evidence that the maize (Zea mays) nuclear gene Pentatricopeptide repeat 2263 (PPR2263) encoding a DYW domain-containing PPR protein is required for RNA editing in the mitochondrial NADH dehydrogenase5 (nad5) and cytochrome b (cob) transcripts at the nad5-1550 and cob-908 sites, respectively. Its putative ortholog, MITOCHONDRIAL EDITING FACTOR29, fulfills the same role in Arabidopsis thaliana. Both the maize and the Arabidopsis proteins show preferential localization to mitochondria but are also detected in chloroplasts. In maize, the corresponding ppr2263 mutation causes growth defects in kernels and seedlings. Embryo and endosperm growth are reduced, leading to the production of small but viable kernels. Mutant plants have narrower and shorter leaves, exhibit a strong delay in flowering time, and generally do not reach sexual maturity. Whereas mutant chloroplasts do not have major defects, mutant mitochondria lack complex III and are characterized by a compromised ultrastructure, increased transcript levels, and the induction of alternative oxidase. The results suggest that mitochondrial RNA editing at the cob-908 site is necessary for mitochondrion biogenesis, cell division, and plant growth in maize.

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Year:  2012        PMID: 22319053      PMCID: PMC3315240          DOI: 10.1105/tpc.111.091074

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  87 in total

1.  rgf1, a mutation reducing grain filling in maize through effects on basal endosperm and pedicel development.

Authors:  M Maitz; G Santandrea; Z Zhang; S Lal; L C Hannah; F Salamini; R D Thompson
Journal:  Plant J       Date:  2000-07       Impact factor: 6.417

2.  Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana.

Authors:  Mizuki Takenaka; Daniil Verbitskiy; Anja Zehrmann; Axel Brennicke
Journal:  J Biol Chem       Date:  2010-06-21       Impact factor: 5.157

3.  Refinement of the triphenyl tetrazolium chloride method of determining cold injury.

Authors:  P L Steponkus; F O Lanphear
Journal:  Plant Physiol       Date:  1967-10       Impact factor: 8.340

4.  Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand.

Authors:  Rosalind Williams-Carrier; Tiffany Kroeger; Alice Barkan
Journal:  RNA       Date:  2008-07-30       Impact factor: 4.942

Review 5.  The evolution of RNA editing and pentatricopeptide repeat genes.

Authors:  Sota Fujii; Ian Small
Journal:  New Phytol       Date:  2011-05-09       Impact factor: 10.151

6.  RNA editing in plant mitochondria.

Authors:  P S Covello; M W Gray
Journal:  Nature       Date:  1989-10-19       Impact factor: 49.962

7.  A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing.

Authors:  Kenji Okuda; Takahiro Nakamura; Mamoru Sugita; Toshiyuki Shimizu; Toshiharu Shikanai
Journal:  J Biol Chem       Date:  2006-10-02       Impact factor: 5.157

8.  Plant mitochondrial RNA editing.

Authors:  S Steinhauser; S Beckert; I Capesius; O Malek; V Knoop
Journal:  J Mol Evol       Date:  1999-03       Impact factor: 2.395

9.  The Miniature1 Seed Locus of Maize Encodes a Cell Wall Invertase Required for Normal Development of Endosperm and Maternal Cells in the Pedicel.

Authors:  W. H. Cheng; E. W. Taliercio; P. S. Chourey
Journal:  Plant Cell       Date:  1996-06       Impact factor: 11.277

10.  Reduction of 2,3,5-triphenyltetrazolium chloride by the KCN-insensitive, salicylhydroxamic acid-sensitive alternative respiratory pathway of mitochondria from cultured grapevine cells.

Authors:  J M Zapata; C Salinas; A A Calderón; R Muñoz; A R Barceló
Journal:  Plant Cell Rep       Date:  1991-12       Impact factor: 4.570

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  46 in total

1.  RNA editing events in mitochondrial genes by ultra-deep sequencing methods: a comparison of cytoplasmic male sterile, fertile and restored genotypes in cotton.

Authors:  Hideaki Suzuki; Jiwen Yu; Scott A Ness; Mary A O'Connell; Jinfa Zhang
Journal:  Mol Genet Genomics       Date:  2013-06-29       Impact factor: 3.291

2.  Maize Dek37 Encodes a P-type PPR Protein That Affects cis-Splicing of Mitochondrial nad2 Intron 1 and Seed Development.

Authors:  Dawei Dai; Shengchao Luan; Xiuzu Chen; Qun Wang; Yang Feng; Chenguang Zhu; Weiwei Qi; Rentao Song
Journal:  Genetics       Date:  2018-01-04       Impact factor: 4.562

3.  Complexome Profiling Reveals Association of PPR Proteins with Ribosomes in the Mitochondria of Plants.

Authors:  Nils Rugen; Henryk Straube; Linda E Franken; Hans-Peter Braun; Holger Eubel
Journal:  Mol Cell Proteomics       Date:  2019-04-25       Impact factor: 5.911

4.  Mitochondrial Function and Maize Kernel Development Requires Dek2, a Pentatricopeptide Repeat Protein Involved in nad1 mRNA Splicing.

Authors:  Weiwei Qi; Yang Yang; Xuzhen Feng; Mingliang Zhang; Rentao Song
Journal:  Genetics       Date:  2016-11-04       Impact factor: 4.562

Review 5.  Molecular and Functional Diversity of RNA Editing in Plant Mitochondria.

Authors:  Wei Tang; Caroline Luo
Journal:  Mol Biotechnol       Date:  2018-12       Impact factor: 2.695

6.  Alterations of mitochondrial protein assembly and jasmonic acid biosynthesis pathway in Honglian (HL)-type cytoplasmic male sterility rice.

Authors:  Gai Liu; Han Tian; Yun-Qing Huang; Jun Hu; Yan-Xiao Ji; Shao-Qing Li; Yu-Qi Feng; Lin Guo; Ying-Guo Zhu
Journal:  J Biol Chem       Date:  2012-10-01       Impact factor: 5.157

7.  Regulation of inflorescence branch development in rice through a novel pathway involving the pentatricopeptide repeat protein sped1-D.

Authors:  Guanghuai Jiang; Yanghai Xiang; Jiying Zhao; Dedong Yin; Xianfeng Zhao; Lihuang Zhu; Wenxue Zhai
Journal:  Genetics       Date:  2014-06-20       Impact factor: 4.562

8.  Editing of Mitochondrial Transcripts nad3 and cox2 by Dek10 Is Essential for Mitochondrial Function and Maize Plant Development.

Authors:  Weiwei Qi; Zhongrui Tian; Lei Lu; Xiuzu Chen; Xinze Chen; Wei Zhang; Rentao Song
Journal:  Genetics       Date:  2017-02-17       Impact factor: 4.562

9.  EMP32 is required for the cis-splicing of nad7 intron 2 and seed development in maize.

Authors:  Yan-Zhuo Yang; Shuo Ding; Xin-Yuan Liu; Jiao-Jiao Tang; Yong Wang; Feng Sun; Chunhui Xu; Bao-Cai Tan
Journal:  RNA Biol       Date:  2020-09-16       Impact factor: 4.652

10.  Using multiplex single-base extension typing to screen for mutants defective in RNA editing.

Authors:  Mizuki Takenaka; Axel Brennicke
Journal:  Nat Protoc       Date:  2012-10-04       Impact factor: 13.491

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