Literature DB >> 20550903

Electrostatics of deformable lipid membranes.

Igor Vorobyov1, Borislava Bekker, Toby W Allen.   

Abstract

It was recently demonstrated that significant local deformations of biological membranes take place due to the fields of charged peptides and ions, challenging the standard model of membrane electrostatics. The ability of ions to retain their immediate hydration environment, combined with the lack of sensitivity of permeability to ion type or even ion pairs, led us to question the extent to which hydration energetics and electrostatics control membrane ion permeation. Using the arginine analog methyl-guanidinium as a test case, we find that although hydrocarbon electronic polarizability causes dramatic changes in ion solvation free energy, as well as a significant change (approximately 0.4 V) in the membrane dipole potential, little change in membrane permeation energetics occurs. We attribute this to compensation of solvation terms from polar and polarizable nonpolar components within the membrane, and explain why the dipole potential is not fully sensed in terms of the locally deformed bilayer interface. Our descriptions provide a deeper understanding of the translocation process and allow predictions for poly-ions, ion pairs, charged lipids, and lipid flip-flop. We also report simulations of large hydrophobic-ion-like membrane defects and the ionophore valinomycin, which exhibit little membrane deformation, as well as hydrophilic defects and the ion channel gramicidin A, to provide parallels to membranes deformed by unassisted ion permeation. (c) 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20550903      PMCID: PMC2884252          DOI: 10.1016/j.bpj.2010.03.046

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  47 in total

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Journal:  Biochem J       Date:  2003-02-15       Impact factor: 3.857

3.  Imaging alpha-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map.

Authors:  Aleksij Aksimentiev; Klaus Schulten
Journal:  Biophys J       Date:  2005-03-11       Impact factor: 4.033

4.  Ion leakage through transient water pores in protein-free lipid membranes driven by transmembrane ionic charge imbalance.

Authors:  Andrey A Gurtovenko; Ilpo Vattulainen
Journal:  Biophys J       Date:  2007-01-05       Impact factor: 4.033

Review 5.  Membrane insertion: The strategies of toxins (review).

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Journal:  Mol Membr Biol       Date:  1997 Apr-Jun       Impact factor: 2.857

6.  Polarizable empirical force field for alkanes based on the classical Drude oscillator model.

Authors:  Igor V Vorobyov; Victor M Anisimov; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2005-10-13       Impact factor: 2.991

Review 7.  The dipole potential of phospholipid membranes and methods for its detection.

Authors:  R J Clarke
Journal:  Adv Colloid Interface Sci       Date:  2001-01-29       Impact factor: 12.984

8.  A continuum method for determining membrane protein insertion energies and the problem of charged residues.

Authors:  Seungho Choe; Karen A Hecht; Michael Grabe
Journal:  J Gen Physiol       Date:  2008-05-12       Impact factor: 4.086

9.  Assessing atomistic and coarse-grained force fields for protein-lipid interactions: the formidable challenge of an ionizable side chain in a membrane.

Authors:  Igor Vorobyov; Libo Li; Toby W Allen
Journal:  J Phys Chem B       Date:  2008-07-18       Impact factor: 2.991

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Journal:  Science       Date:  1972-02-18       Impact factor: 47.728

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  21 in total

1.  Continuum approaches to understanding ion and peptide interactions with the membrane.

Authors:  Naomi R Latorraca; Keith M Callenberg; Jon P Boyle; Michael Grabe
Journal:  J Membr Biol       Date:  2014-03-21       Impact factor: 1.843

2.  Surfactant functionalization induces robust, differential adhesion of tumor cells and blood cells to charged nanotube-coated biomaterials under flow.

Authors:  Michael J Mitchell; Carlos A Castellanos; Michael R King
Journal:  Biomaterials       Date:  2015-04-17       Impact factor: 12.479

3.  Membrane permeation of a peptide: it is better to be positive.

Authors:  Alfredo E Cardenas; Rebika Shrestha; Lauren J Webb; Ron Elber
Journal:  J Phys Chem B       Date:  2015-05-13       Impact factor: 2.991

4.  Challenges and advances in atomistic simulations of potassium and sodium ion channel gating and permeation.

Authors:  Kevin R DeMarco; Slava Bekker; Igor Vorobyov
Journal:  J Physiol       Date:  2018-12-19       Impact factor: 5.182

5.  Transfer of arginine into lipid bilayers is nonadditive.

Authors:  Justin L MacCallum; W F Drew Bennett; D Peter Tieleman
Journal:  Biophys J       Date:  2011-07-06       Impact factor: 4.033

6.  Electrostatics-driven shape transitions in soft shells.

Authors:  Vikram Jadhao; Creighton K Thomas; Monica Olvera de la Cruz
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-18       Impact factor: 11.205

7.  Ion-induced defect permeation of lipid membranes.

Authors:  Igor Vorobyov; Timothy E Olson; Jung H Kim; Roger E Koeppe; Olaf S Andersen; Toby W Allen
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

8.  Influence of the membrane dipole potential on peptide binding to lipid bilayers.

Authors:  Huan Zhan; Themis Lazaridis
Journal:  Biophys Chem       Date:  2011-10-30       Impact factor: 2.352

9.  Free energetics of arginine permeation into model DMPC lipid bilayers: coupling of effective counterion concentration and lateral bilayer dimensions.

Authors:  Yuan Hu; Shuching Ou; Sandeep Patel
Journal:  J Phys Chem B       Date:  2013-09-16       Impact factor: 2.991

Review 10.  An NMR database for simulations of membrane dynamics.

Authors:  Avigdor Leftin; Michael F Brown
Journal:  Biochim Biophys Acta       Date:  2010-12-04
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