Literature DB >> 21723820

Transfer of arginine into lipid bilayers is nonadditive.

Justin L MacCallum1, W F Drew Bennett, D Peter Tieleman.   

Abstract

Computer simulations suggest that the translocation of arginine through the hydrocarbon core of a lipid membrane proceeds by the formation of a water-filled defect that keeps the arginine molecule hydrated even at the center of the bilayer. We show here that adding additional arginine molecules into one of these water defects causes only a small change in free energy. The barrier for transferring multiple arginines through the membrane is approximately the same as for a single arginine and may even be lower depending on the exact geometry of the system. We discuss these results in the context of arginine-rich peptides such as antimicrobial and cell-penetrating peptides.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21723820      PMCID: PMC3127173          DOI: 10.1016/j.bpj.2011.05.038

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  54 in total

1.  Molecular dynamics of phenol at the liquid-vapor interface of water.

Authors:  A Pohorille; I Benjamin
Journal:  J Chem Phys       Date:  1991-04-15       Impact factor: 3.488

2.  Driving forces for adsorption of amphiphilic peptides to the air-water interface.

Authors:  Ozge Engin; Alessandra Villa; Mehmet Sayar; Berk Hess
Journal:  J Phys Chem B       Date:  2010-09-02       Impact factor: 2.991

3.  Hydration shell exchange dynamics during ion transfer across the liquid/liquid interface.

Authors:  Ilya Chorny; Ilan Benjamin
Journal:  J Phys Chem B       Date:  2005-09-01       Impact factor: 2.991

4.  Ion distributions near a liquid-liquid interface.

Authors:  Guangming Luo; Sarka Malkova; Jaesung Yoon; David G Schultz; Binhua Lin; Mati Meron; Ilan Benjamin; Petr Vanysek; Mark L Schlossman
Journal:  Science       Date:  2006-01-13       Impact factor: 47.728

5.  A voltage-sensor water pore.

Authors:  J Alfredo Freites; Douglas J Tobias; Stephen H White
Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

6.  Molecular simulations of lipid flip-flop in the presence of model transmembrane helices.

Authors:  Nicolas Sapay; W F Drew Bennett; D Peter Tieleman
Journal:  Biochemistry       Date:  2010-09-07       Impact factor: 3.162

7.  Is arginine charged in a membrane?

Authors:  Libo Li; Igor Vorobyov; Alexander D MacKerell; Toby W Allen
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

8.  A continuum method for determining membrane protein insertion energies and the problem of charged residues.

Authors:  Seungho Choe; Karen A Hecht; Michael Grabe
Journal:  J Gen Physiol       Date:  2008-05-12       Impact factor: 4.086

9.  Assessing atomistic and coarse-grained force fields for protein-lipid interactions: the formidable challenge of an ionizable side chain in a membrane.

Authors:  Igor Vorobyov; Libo Li; Toby W Allen
Journal:  J Phys Chem B       Date:  2008-07-18       Impact factor: 2.991

10.  Structure and hydration of membranes embedded with voltage-sensing domains.

Authors:  Dmitriy Krepkiy; Mihaela Mihailescu; J Alfredo Freites; Eric V Schow; David L Worcester; Klaus Gawrisch; Douglas J Tobias; Stephen H White; Kenton J Swartz
Journal:  Nature       Date:  2009-11-26       Impact factor: 49.962

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  35 in total

1.  Unassisted transport of N-acetyl-L-tryptophanamide through membrane: experiment and simulation of kinetics.

Authors:  Alfredo E Cardenas; Gouri S Jas; Kristine Y DeLeon; Wendy A Hegefeld; Krzysztof Kuczera; Ron Elber
Journal:  J Phys Chem B       Date:  2012-02-22       Impact factor: 2.991

2.  Outer membrane phospholipase A in phospholipid bilayers: a model system for concerted computational and experimental investigations of amino acid side chain partitioning into lipid bilayers.

Authors:  Patrick J Fleming; J Alfredo Freites; C Preston Moon; Douglas J Tobias; Karen G Fleming
Journal:  Biochim Biophys Acta       Date:  2011-07-22

3.  Membrane permeation of a peptide: it is better to be positive.

Authors:  Alfredo E Cardenas; Rebika Shrestha; Lauren J Webb; Ron Elber
Journal:  J Phys Chem B       Date:  2015-05-13       Impact factor: 2.991

4.  Thermodynamics of antimicrobial lipopeptide binding to membranes: origins of affinity and selectivity.

Authors:  Dejun Lin; Alan Grossfield
Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

5.  A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations.

Authors:  Zongan Wang; John M Jumper; Sheng Wang; Karl F Freed; Tobin R Sosnick
Journal:  Biophys J       Date:  2018-10-23       Impact factor: 4.033

6.  Free energy of translocating an arginine-rich cell-penetrating peptide across a lipid bilayer suggests pore formation.

Authors:  Kun Huang; Angel E García
Journal:  Biophys J       Date:  2013-01-22       Impact factor: 4.033

7.  Interactions between ionizable amino acid side chains at a lipid bilayer-water interface.

Authors:  Olga Yuzlenko; Themis Lazaridis
Journal:  J Phys Chem B       Date:  2011-11-01       Impact factor: 2.991

8.  Ion-induced defect permeation of lipid membranes.

Authors:  Igor Vorobyov; Timothy E Olson; Jung H Kim; Roger E Koeppe; Olaf S Andersen; Toby W Allen
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

9.  Atomistic simulations of pore formation and closure in lipid bilayers.

Authors:  W F Drew Bennett; Nicolas Sapay; D Peter Tieleman
Journal:  Biophys J       Date:  2014-01-07       Impact factor: 4.033

10.  Implicit membrane treatment of buried charged groups: application to peptide translocation across lipid bilayers.

Authors:  Themis Lazaridis; John M Leveritt; Leo PeBenito
Journal:  Biochim Biophys Acta       Date:  2014-02-10
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