Literature DB >> 24507599

Ion-induced defect permeation of lipid membranes.

Igor Vorobyov1, Timothy E Olson2, Jung H Kim2, Roger E Koeppe3, Olaf S Andersen4, Toby W Allen5.   

Abstract

We have explored the mechanisms of uncatalyzed membrane ion permeation using atomistic simulations and electrophysiological recordings. The solubility-diffusion mechanism of membrane charge transport has prevailed since the 1960s, despite inconsistencies in experimental observations and its lack of consideration for the flexible response of lipid bilayers. We show that direct lipid bilayer translocation of alkali metal cations, Cl(-), and a charged arginine side chain analog occurs via an ion-induced defect mechanism. Contrary to some previous suggestions, the arginine analog experiences a large free-energy barrier, very similar to those for Na(+), K(+), and Cl(-). Our simulations reveal that membrane perturbations, due to the movement of an ion, are central for explaining the permeation process, leading to both free-energy and diffusion-coefficient profiles that show little dependence on ion chemistry and charge, despite wide-ranging hydration energies and the membrane's dipole potential. The results yield membrane permeabilities that are in semiquantitative agreement with experiments in terms of both magnitude and selectivity. We conclude that ion-induced defect-mediated permeation may compete with transient pores as the dominant mechanism of uncatalyzed ion permeation, providing new understanding for the actions of a range of membrane-active peptides and proteins.
Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 24507599      PMCID: PMC3945052          DOI: 10.1016/j.bpj.2013.12.027

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  53 in total

Review 1.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

Review 2.  Biomolecular simulation: a computational microscope for molecular biology.

Authors:  Ron O Dror; Robert M Dirks; J P Grossman; Huafeng Xu; David E Shaw
Journal:  Annu Rev Biophys       Date:  2012       Impact factor: 12.981

3.  Side-chain hydrophobicity scale derived from transmembrane protein folding into lipid bilayers.

Authors:  C Preston Moon; Karen G Fleming
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

4.  Effect of phloretin on the permeability of thin lipid membranes.

Authors:  O S Andersen; A Finkelstein; I Katz; A Cass
Journal:  J Gen Physiol       Date:  1976-06       Impact factor: 4.086

5.  Reversible electrical breakdown of lipid bilayers: formation and evolution of pores.

Authors:  R W Glaser; S L Leikin; L V Chernomordik; V F Pastushenko; A I Sokirko
Journal:  Biochim Biophys Acta       Date:  1988-05-24

6.  The membrane dipole potential in a total membrane potential model. Applications to hydrophobic ion interactions with membranes.

Authors:  R F Flewelling; W L Hubbell
Journal:  Biophys J       Date:  1986-02       Impact factor: 4.033

7.  Permeability properties of phospholipid membranes: effect of cholesterol and temperature.

Authors:  D Papahadjopoulos; S Nir; S Oki
Journal:  Biochim Biophys Acta       Date:  1972-06-20

8.  The variation of capacitance and conductance of bimolecular lipid membranes with area.

Authors:  T Hanai; D A Haydon; J Taylor
Journal:  J Theor Biol       Date:  1965-11       Impact factor: 2.691

9.  Assessing atomistic and coarse-grained force fields for protein-lipid interactions: the formidable challenge of an ionizable side chain in a membrane.

Authors:  Igor Vorobyov; Libo Li; Toby W Allen
Journal:  J Phys Chem B       Date:  2008-07-18       Impact factor: 2.991

10.  Accelerating Convergence in Molecular Dynamics Simulations of Solutes in Lipid Membranes by Conducting a Random Walk along the Bilayer Normal.

Authors:  Chris Neale; Chris Madill; Sarah Rauscher; Régis Pomès
Journal:  J Chem Theory Comput       Date:  2013-07-17       Impact factor: 6.006

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  29 in total

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Authors:  Alfredo E Cardenas; Rebika Shrestha; Lauren J Webb; Ron Elber
Journal:  J Phys Chem B       Date:  2015-05-13       Impact factor: 2.991

Review 2.  Molecular Dynamics Simulations of Membrane Permeability.

Authors:  Richard M Venable; Andreas Krämer; Richard W Pastor
Journal:  Chem Rev       Date:  2019-02-12       Impact factor: 60.622

3.  Probing Lipid Bilayers under Ionic Imbalance.

Authors:  Jiaqi Lin; Alfredo Alexander-Katz
Journal:  Biophys J       Date:  2016-12-06       Impact factor: 4.033

4.  Influence of Lipid Saturation, Hydrophobic Length and Cholesterol on Double-Arginine-Containing Helical Peptides in Bilayer Membranes.

Authors:  Karli Lipinski; Matthew J McKay; Fahmida Afrose; Ashley N Martfeld; Roger E Koeppe; Denise V Greathouse
Journal:  Chembiochem       Date:  2019-09-18       Impact factor: 3.164

Review 5.  Competing for the same space: protons and alkali ions at the interface of phospholipid bilayers.

Authors:  Evelyne Deplazes; Jacqueline White; Christopher Murphy; Charles G Cranfield; Alvaro Garcia
Journal:  Biophys Rev       Date:  2019-05-21

6.  Effects of seawater acclimation at constant and diel cyclic temperatures on growth, osmoregulation and branchial phospholipid fatty acid composition in rainbow trout Oncorhynchus mykiss.

Authors:  Jian Ge; Ming Huang; Yangen Zhou; Qianlong Deng; Rongxin Liu; Qinfeng Gao; Yunwei Dong; Shuanglin Dong
Journal:  J Comp Physiol B       Date:  2021-02-11       Impact factor: 2.200

7.  Binding of trivalent metal ions (Al3+, In3+, La3+) with phosphatidylcholine liposomal membranes investigated by microelectrophoresis.

Authors:  Joanna Kotyńska; Zbigniew A Figaszewski
Journal:  Eur Phys J E Soft Matter       Date:  2018-05-29       Impact factor: 1.890

8.  Defect-Assisted Permeation Through a Phospholipid Membrane: Experimental and Computational Study of the Peptide WKW.

Authors:  Arman Fathizadeh; Molly Kogan; Cari M Anderson; Lauren J Webb; Ron Elber
Journal:  J Phys Chem B       Date:  2019-07-26       Impact factor: 2.991

9.  Refining the treatment of membrane proteins by coarse-grained models.

Authors:  Igor Vorobyov; Ilsoo Kim; Zhen T Chu; Arieh Warshel
Journal:  Proteins       Date:  2015-12-09

10.  Sequence-Dependent Interfacial Adsorption and Permeation of Dipeptides across Phospholipid Membranes.

Authors:  Chenyu Wei; Andrew Pohorille
Journal:  J Phys Chem B       Date:  2017-10-16       Impact factor: 2.991

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