Literature DB >> 20509649

A resonance assignment method for oriented-sample solid-state NMR of proteins.

Robert W Knox1, George J Lu, Stanley J Opella, Alexander A Nevzorov.   

Abstract

A general sequential assignment strategy for uniformly (15)N-labeled uniaxially aligned membrane proteins is proposed. Mismatched Hartmann-Hahn magnetization transfer is employed to establish proton-mediated correlations among the neighboring (15)N backbone spins. Magnetically aligned Pf1 phage coat protein was used to illustrate the method. Exchanged and nonexchanged separated local field spectra were acquired and overlaid to distinguish the cross-peaks from the main peaks. Most of the original assignments from the literature were confirmed without selectively labeled samples. This method is applicable to proteins with arbitrary topology and will find use in assigning solid-state NMR spectra of oriented membrane proteins for their subsequent structure determination.

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Year:  2010        PMID: 20509649      PMCID: PMC2909040          DOI: 10.1021/ja102932n

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

1.  Structures of the M2 channel-lining segments from nicotinic acetylcholine and NMDA receptors by NMR spectroscopy.

Authors:  S J Opella; F M Marassi; J J Gesell; A P Valente; Y Kim; M Oblatt-Montal; M Montal
Journal:  Nat Struct Biol       Date:  1999-04

2.  Structure of the transmembrane region of the M2 protein H(+) channel.

Authors:  J Wang; S Kim; F Kovacs; T A Cross
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

3.  Using pisa pies to resolve ambiguities in angular constraints from PISEMA spectra of aligned proteins.

Authors:  Francesca M Marassi; Stanley J Opella
Journal:  J Biomol NMR       Date:  2002-07       Impact factor: 2.835

4.  Structure determination of a membrane protein with two trans-membrane helices in aligned phospholipid bicelles by solid-state NMR spectroscopy.

Authors:  Anna A De Angelis; Stanley C Howell; Alexander A Nevzorov; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2006-09-20       Impact factor: 15.419

5.  Mismatched Hartmann-Hahn conditions cause proton-mediated intermolecular magnetization transfer between dilute low-spin nuclei in NMR of static solids.

Authors:  Alexander A Nevzorov
Journal:  J Am Chem Soc       Date:  2008-08-02       Impact factor: 15.419

6.  High-resolution conformation of gramicidin A in a lipid bilayer by solid-state NMR.

Authors:  R R Ketchem; W Hu; T A Cross
Journal:  Science       Date:  1993-09-10       Impact factor: 47.728

7.  Spin diffusion in resolved solid-state NMR spectra.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1985-11-01

8.  Three-dimensional structure of the transmembrane domain of Vpu from HIV-1 in aligned phospholipid bicelles.

Authors:  Sang Ho Park; Anna A De Angelis; Alexander A Nevzorov; Chin H Wu; Stanley J Opella
Journal:  Biophys J       Date:  2006-07-21       Impact factor: 4.033

9.  Structural basis of the temperature transition of Pf1 bacteriophage.

Authors:  David S Thiriot; Alexander A Nevzorov; Stanley J Opella
Journal:  Protein Sci       Date:  2005-03-01       Impact factor: 6.725

10.  Structure of the coat protein in Pf1 bacteriophage determined by solid-state NMR spectroscopy.

Authors:  David S Thiriot; Alexander A Nevzorov; Lena Zagyanskiy; Chin H Wu; Stanley J Opella
Journal:  J Mol Biol       Date:  2004-08-13       Impact factor: 5.469

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  25 in total

1.  Multidimensional oriented solid-state NMR experiments enable the sequential assignment of uniformly 15N labeled integral membrane proteins in magnetically aligned lipid bilayers.

Authors:  Kaustubh R Mote; T Gopinath; Nathaniel J Traaseth; Jason Kitchen; Peter L Gor'kov; William W Brey; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2011-11       Impact factor: 2.835

2.  Proton evolved local field solid-state nuclear magnetic resonance using Hadamard encoding: theory and application to membrane proteins.

Authors:  T Gopinath; Kaustubh R Mote; Gianluigi Veglia
Journal:  J Chem Phys       Date:  2011-08-21       Impact factor: 3.488

3.  Sensitivity enhancement for membrane proteins reconstituted in parallel and perpendicular oriented bicelles obtained by using repetitive cross-polarization and membrane-incorporated free radicals.

Authors:  Sophie N Koroloff; Deanna M Tesch; Emmanuel O Awosanya; Alexander A Nevzorov
Journal:  J Biomol NMR       Date:  2017-02-15       Impact factor: 2.835

4.  A spectroscopic assignment technique for membrane proteins reconstituted in magnetically aligned bicelles.

Authors:  Wenxing Tang; Robert W Knox; Alexander A Nevzorov
Journal:  J Biomol NMR       Date:  2012-09-14       Impact factor: 2.835

5.  Mechanism of dilute-spin-exchange in solid-state NMR.

Authors:  George J Lu; Stanley J Opella
Journal:  J Chem Phys       Date:  2014-03-28       Impact factor: 3.488

6.  Application of paramagnetic relaxation enhancements to accelerate the acquisition of 2D and 3D solid-state NMR spectra of oriented membrane proteins.

Authors:  Songlin Wang; T Gopinath; Gianluigi Veglia
Journal:  Methods       Date:  2017-12-22       Impact factor: 3.608

7.  Combination of ¹⁵N reverse labeling and afterglow spectroscopy for assigning membrane protein spectra by magic-angle-spinning solid-state NMR: application to the multidrug resistance protein EmrE.

Authors:  James R Banigan; Anindita Gayen; Nathaniel J Traaseth
Journal:  J Biomol NMR       Date:  2013-03-29       Impact factor: 2.835

Review 8.  Isotope labeling for solution and solid-state NMR spectroscopy of membrane proteins.

Authors:  Raffaello Verardi; Nathaniel J Traaseth; Larry R Masterson; Vitaly V Vostrikov; Gianluigi Veglia
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

9.  Solid state NMR strategy for characterizing native membrane protein structures.

Authors:  Dylan T Murray; Nabanita Das; Timothy A Cross
Journal:  Acc Chem Res       Date:  2013-03-07       Impact factor: 22.384

Review 10.  Spatial reorientation experiments for NMR of solids and partially oriented liquids.

Authors:  Rachel W Martin; John E Kelly; Kelsey A Collier
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-10-23       Impact factor: 9.795

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