Literature DB >> 12238596

Using pisa pies to resolve ambiguities in angular constraints from PISEMA spectra of aligned proteins.

Francesca M Marassi1, Stanley J Opella.   

Abstract

The structures of proteins are mapped onto the patterns of resonances in NMR spectra of aligned samples. This is most clearly illustrated with Pisa wheels of helical membrane proteins, where the distinctive 'wheel-like' patterns of resonances reflect the tilt and rotation of the helices in the bilayers. These patterns contain both structural and assignment information. This Communication describes a simple way of using this information to resolve angular ambiguities inherent in orientational constraints derived from NMR data. This contributes to the use of solid-state NMR of aligned samples for protein structure determination.

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Year:  2002        PMID: 12238596      PMCID: PMC2920879          DOI: 10.1023/a:1019887612018

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  8 in total

1.  Imaging membrane protein helical wheels.

Authors:  J Wang; J Denny; C Tian; S Kim; Y Mo; F Kovacs; Z Song; K Nishimura; Z Gan; R Fu; J R Quine; T A Cross
Journal:  J Magn Reson       Date:  2000-05       Impact factor: 2.229

2.  Structures of the M2 channel-lining segments from nicotinic acetylcholine and NMDA receptors by NMR spectroscopy.

Authors:  S J Opella; F M Marassi; J J Gesell; A P Valente; Y Kim; M Oblatt-Montal; M Montal
Journal:  Nat Struct Biol       Date:  1999-04

3.  Structure of the transmembrane region of the M2 protein H(+) channel.

Authors:  J Wang; S Kim; F Kovacs; T A Cross
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

4.  Use of helical wheels to represent the structures of proteins and to identify segments with helical potential.

Authors:  M Schiffer; A B Edmundson
Journal:  Biophys J       Date:  1967-03       Impact factor: 4.033

5.  High-resolution conformation of gramicidin A in a lipid bilayer by solid-state NMR.

Authors:  R R Ketchem; W Hu; T A Cross
Journal:  Science       Date:  1993-09-10       Impact factor: 47.728

6.  A simple approach to membrane protein secondary structure and topology based on NMR spectroscopy.

Authors:  F M Marassi
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

Review 7.  Protein structure by solid-state NMR spectroscopy.

Authors:  S J Opella; P L Stewart; K G Valentine
Journal:  Q Rev Biophys       Date:  1987-02       Impact factor: 5.318

8.  Three-dimensional solid-state NMR spectroscopy is essential for resolution of resonances from in-plane residues in uniformly (15)N-labeled helical membrane proteins in oriented lipid bilayers.

Authors:  F M Marassi; C Ma; J J Gesell; S J Opella
Journal:  J Magn Reson       Date:  2000-05       Impact factor: 2.229

  8 in total
  15 in total

1.  Simultaneous assignment and structure determination of a membrane protein from NMR orientational restraints.

Authors:  Francesca M Marassi; Stanley J Opella
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

Review 2.  Structure determination of membrane proteins by NMR spectroscopy.

Authors:  Stanley J Opella; Francesca M Marassi
Journal:  Chem Rev       Date:  2004-08       Impact factor: 60.622

Review 3.  Structure determination of membrane proteins in five easy pieces.

Authors:  Francesca M Marassi; Bibhuti B Das; George J Lu; Henry J Nothnagel; Sang Ho Park; Woo Sung Son; Ye Tian; Stanley J Opella
Journal:  Methods       Date:  2011-09-20       Impact factor: 3.608

4.  A resonance assignment method for oriented-sample solid-state NMR of proteins.

Authors:  Robert W Knox; George J Lu; Stanley J Opella; Alexander A Nevzorov
Journal:  J Am Chem Soc       Date:  2010-06-23       Impact factor: 15.419

5.  Continuity conditions and torsion angles from ssNMR orientational restraints.

Authors:  S Achuthan; T Asbury; J Hu; R Bertram; T A Cross; J R Quine
Journal:  J Magn Reson       Date:  2007-12-03       Impact factor: 2.229

6.  NMR of membrane proteins in micelles and bilayers: the FXYD family proteins.

Authors:  Carla M Franzin; Xiao-Min Gong; Khang Thai; Jinghua Yu; Francesca M Marassi
Journal:  Methods       Date:  2007-04       Impact factor: 3.608

Review 7.  Nuclear magnetic resonance structural studies of membrane proteins in micelles and bilayers.

Authors:  Xiao-Min Gong; Carla M Franzin; Khang Thai; Jinghua Yu; Francesca M Marassi
Journal:  Methods Mol Biol       Date:  2007

8.  Tilt and azimuthal angles of a transmembrane peptide: a comparison between molecular dynamics calculations and solid-state NMR data of sarcolipin in lipid membranes.

Authors:  Lei Shi; Alessandro Cembran; Jiali Gao; Gianluigi Veglia
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

9.  Structural basis of the temperature transition of Pf1 bacteriophage.

Authors:  David S Thiriot; Alexander A Nevzorov; Stanley J Opella
Journal:  Protein Sci       Date:  2005-03-01       Impact factor: 6.725

10.  The hand of the filamentous bacteriophage helix.

Authors:  S K Straus; W R P Scott; D A Marvin
Journal:  Eur Biophys J       Date:  2008-04-18       Impact factor: 1.733

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