Literature DB >> 11796110

Probing substates in sperm whale myoglobin using high-pressure crystallography.

Paul Urayama1, George N Phillips, Sol M Gruner.   

Abstract

Pressures in the 100 MPa range are known to have an enormous number of effects on the action of proteins, but straightforward means for determining the structural basis of these effects have been lacking. Here, crystallography has been used to probe effects of pressure on sperm whale myoglobin structure. A comparison of pressure effects with those seen at low pH suggests that structural changes under pressure are interpretable as a shift in the populations of conformational substates. Furthermore, a novel high-pressure protein crystal-cooling method has been used to show low-temperature metastability, providing an alternative to room temperature, beryllium pressure cell-based techniques. The change in protein structure due to pressure is not purely compressive and involves conformational changes important to protein activity. Correlation with low-pH structures suggests observed structural changes are associated with global conformational substates. Methods developed here open up a direct avenue for exploration of the effects of pressure on proteins.

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Year:  2002        PMID: 11796110     DOI: 10.1016/s0969-2126(01)00699-2

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  37 in total

1.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

Review 2.  Myoglobin: the hydrogen atom of biology and a paradigm of complexity.

Authors:  H Frauenfelder; B H McMahon; P W Fenimore
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-14       Impact factor: 11.205

3.  Fast high-pressure freezing of protein crystals in their mother liquor.

Authors:  Anja Burkhardt; Martin Warmer; Saravanan Panneerselvam; Armin Wagner; Athina Zouni; Carina Glöckner; Rudolph Reimer; Heinrich Hohenberg; Alke Meents
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-03-31

4.  Structure-function perturbation and dissociation of tetrameric urate oxidase by high hydrostatic pressure.

Authors:  Eric Girard; Stéphane Marchal; Javier Perez; Stéphanie Finet; Richard Kahn; Roger Fourme; Guillaume Marassio; Anne-Claire Dhaussy; Thierry Prangé; Marion Giffard; Fabienne Dulin; Françoise Bonneté; Reinhard Lange; Jacques H Abraini; Mohamed Mezouar; Nathalie Colloc'h
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

5.  Classic Analysis of Biopolymer Dynamics Is Model Free.

Authors:  R Bryn Fenwick; H Jane Dyson
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

6.  Cooperative water filling of a nonpolar protein cavity observed by high-pressure crystallography and simulation.

Authors:  Marcus D Collins; Gerhard Hummer; Michael L Quillin; Brian W Matthews; Sol M Gruner
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-03       Impact factor: 11.205

7.  Simulations of the pressure and temperature unfolding of an alpha-helical peptide.

Authors:  Dietmar Paschek; S Gnanakaran; Angel E Garcia
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-30       Impact factor: 11.205

8.  Protein translocation by bacterial toxin channels: a comparison of diphtheria toxin and colicin Ia.

Authors:  Zhengyan Wu; Karen S Jakes; Ben S Samelson-Jones; Bing Lai; Gang Zhao; Erwin London; Alan Finkelstein
Journal:  Biophys J       Date:  2006-08-11       Impact factor: 4.033

9.  Circular dichroism and site-directed spin labeling reveal structural and dynamical features of high-pressure states of myoglobin.

Authors:  Michael T Lerch; Joseph Horwitz; John McCoy; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-18       Impact factor: 11.205

10.  Oxygen-binding heme complexes of peptides designed to mimic the heme environment of myoglobin and hemoglobin.

Authors:  M Zouhair Atassi; Catherine Childress
Journal:  Protein J       Date:  2005-01       Impact factor: 2.371

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