Literature DB >> 20482320

Small-angle X-ray and neutron scattering as a tool for structural systems biology.

Dmitri I Svergun1.   

Abstract

Small-angle scattering (SAS) of X-rays and neutrons reveals low-resolution structures of biological macromolecules in solution. With the recent experimental and methodological advances, SAS became a unique tool for characterising biological systems. The method covers an extremely broad range of molecule sizes (from a few kDa to hundreds of MDa) and experimental conditions (temperature, pH, salinity, ligand addition, etc.), which is of primary importance for a systemic approach in structural biology. The method provides unique information about the overall structure and conformational changes of native individual proteins, functional complexes, flexible macromolecules and hierarchical systems. New developments in small-angle X-ray and neutron scattering studies of biological macromolecules in solution are briefly reviewed, with a special emphasis on technical and methodological approaches useful for structural systems biology. Possibilities of synergistic use of the method with other techniques are considered.

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Year:  2010        PMID: 20482320     DOI: 10.1515/BC.2010.093

Source DB:  PubMed          Journal:  Biol Chem        ISSN: 1431-6730            Impact factor:   3.915


  22 in total

Review 1.  Small angle neutron scattering for the study of solubilised membrane proteins.

Authors:  Cécile Breyton; Frank Gabel; Mathilde Lethier; Ali Flayhan; Grégory Durand; Jean-Michel Jault; Céline Juillan-Binard; Lionel Imbert; Martine Moulin; Stéphanie Ravaud; Michael Härtlein; Christine Ebel
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-16       Impact factor: 1.890

Review 2.  Nuclear magnetic resonance analysis of protein-DNA interactions.

Authors:  S Campagne; V Gervais; A Milon
Journal:  J R Soc Interface       Date:  2011-03-09       Impact factor: 4.118

3.  Small and Wide Angle X-ray Scattering studies of biological macromolecules in solution.

Authors:  Li Liu; Lauren Boldon; Melissa Urquhart; Xiangyu Wang
Journal:  J Vis Exp       Date:  2013-01-08       Impact factor: 1.355

4.  Wide-angle X-ray solution scattering for protein-ligand binding: multivariate curve resolution with Bayesian confidence intervals.

Authors:  David D L Minh; Lee Makowski
Journal:  Biophys J       Date:  2013-02-19       Impact factor: 4.033

5.  Solution structure of clostridial collagenase H and its calcium-dependent global conformation change.

Authors:  Naomi Ohbayashi; Takashi Matsumoto; Hiroki Shima; Masafumi Goto; Kimiko Watanabe; Akihito Yamano; Yasutake Katoh; Kazuhiko Igarashi; Youhei Yamagata; Kazutaka Murayama
Journal:  Biophys J       Date:  2013-04-02       Impact factor: 4.033

6.  Probing the conformation of FhaC with small-angle neutron scattering and molecular modeling.

Authors:  Frank Gabel; Marc F Lensink; Bernard Clantin; Françoise Jacob-Dubuisson; Vincent Villeret; Christine Ebel
Journal:  Biophys J       Date:  2014-07-01       Impact factor: 4.033

Review 7.  Developing advanced X-ray scattering methods combined with crystallography and computation.

Authors:  J Jefferson P Perry; John A Tainer
Journal:  Methods       Date:  2013-01-29       Impact factor: 3.608

Review 8.  Chemokine oligomerization in cell signaling and migration.

Authors:  Xu Wang; Joshua S Sharp; Tracy M Handel; James H Prestegard
Journal:  Prog Mol Biol Transl Sci       Date:  2013       Impact factor: 3.622

Review 9.  Methods for Physical Characterization of Phase-Separated Bodies and Membrane-less Organelles.

Authors:  Diana M Mitrea; Bappaditya Chandra; Mylene C Ferrolino; Eric B Gibbs; Michele Tolbert; Michael R White; Richard W Kriwacki
Journal:  J Mol Biol       Date:  2018-07-24       Impact factor: 5.469

10.  XLF and APLF bind Ku80 at two remote sites to ensure DNA repair by non-homologous end joining.

Authors:  Clement Nemoz; Virginie Ropars; Philippe Frit; Amandine Gontier; Pascal Drevet; Jinchao Yu; Raphaël Guerois; Aurelien Pitois; Audrey Comte; Christine Delteil; Nadia Barboule; Pierre Legrand; Sonia Baconnais; Yandong Yin; Satish Tadi; Emeline Barbet-Massin; Imre Berger; Eric Le Cam; Mauro Modesti; Eli Rothenberg; Patrick Calsou; Jean Baptiste Charbonnier
Journal:  Nat Struct Mol Biol       Date:  2018-10-05       Impact factor: 15.369

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