Literature DB >> 23442966

Wide-angle X-ray solution scattering for protein-ligand binding: multivariate curve resolution with Bayesian confidence intervals.

David D L Minh1, Lee Makowski.   

Abstract

A new way to use wide-angle x-ray solution scattering to study protein-ligand binding is presented. First, scattering patterns are measured at different protein and ligand concentrations. Multivariate curve resolution based on singular value decomposition and global analysis is applied to estimate the binding affinities and reference patterns (i.e., the scattering patterns of individual components). As validated by simulation, Bayesian confidence intervals provide accurate uncertainty estimates for the binding free energies and reference patterns. Experimental results from several protein-ligand systems demonstrate the feasibility of the approach, which promises to expand the role of wide-angle x-ray scattering as a quantitative biophysical tool.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23442966      PMCID: PMC3576546          DOI: 10.1016/j.bpj.2012.12.019

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  43 in total

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4.  X-ray diffraction "fingerprinting" of DNA structure in solution for quantitative evaluation of molecular dynamics simulation.

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-27       Impact factor: 11.205

5.  Global molecular structure and interfaces: refining an RNA:RNA complex structure using solution X-ray scattering data.

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5.  Bayesian analysis of isothermal titration calorimetry for binding thermodynamics.

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6.  REGALS: a general method to deconvolve X-ray scattering data from evolving mixtures.

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7.  Bayesian regression and model selection for isothermal titration calorimetry with enantiomeric mixtures.

Authors:  Trung Hai Nguyen; Van N T La; Kyle Burke; David D L Minh
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Review 8.  Investigating increasingly complex macromolecular systems with small-angle X-ray scattering.

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9.  Assembly of Capsids from Hepatitis B Virus Core Protein Progresses through Highly Populated Intermediates in the Presence and Absence of RNA.

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  9 in total

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