Literature DB >> 23328742

Small and Wide Angle X-ray Scattering studies of biological macromolecules in solution.

Li Liu1, Lauren Boldon, Melissa Urquhart, Xiangyu Wang.   

Abstract

In this paper, Small and Wide Angle X-ray Scattering (SWAXS) analysis of macromolecules is demonstrated through experimentation. SWAXS is a technique where X-rays are elastically scattered by an inhomogeneous sample in the nm-range at small angles (typically 0.1 - 5°) and wide angles (typically > 5°). This technique provides information about the shape, size, and distribution of macromolecules, characteristic distances of partially ordered materials, pore sizes, and surface-to-volume ratio. Small Angle X-ray Scattering (SAXS) is capable of delivering structural information of macromolecules between 1 and 200 nm, whereas Wide Angle X-ray Scattering (WAXS) can resolve even smaller Bragg spacing of samples between 0.33 nm and 0.49 nm based on the specific system setup and detector. The spacing is determined from Bragg's law and is dependent on the wavelength and incident angle. In a SWAXS experiment, the materials can be solid or liquid and may contain solid, liquid or gaseous domains (so-called particles) of the same or another material in any combination. SWAXS applications are very broad and include colloids of all types: metals, composites, cement, oil, polymers, plastics, proteins, foods, and pharmaceuticals. For solid samples, the thickness is limited to approximately 5 mm. Usage of a lab-based SWAXS instrument is detailed in this paper. With the available software (e.g., GNOM-ATSAS 2.3 package by D. Svergun EMBL-Hamburg and EasySWAXS software) for the SWAXS system, an experiment can be conducted to determine certain parameters of interest for the given sample. One example of a biological macromolecule experiment is the analysis of 2 wt% lysozyme in a water-based aqueous buffer which can be chosen and prepared through numerous methods. The preparation of the sample follows the guidelines below in the Preparation of the Sample section. Through SWAXS experimentation, important structural parameters of lysozyme, e.g. the radius of gyration, can be analyzed.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23328742      PMCID: PMC3671599          DOI: 10.3791/4160

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  6 in total

Review 1.  Small-angle X-ray and neutron scattering as a tool for structural systems biology.

Authors:  Dmitri I Svergun
Journal:  Biol Chem       Date:  2010-07       Impact factor: 3.915

Review 2.  Structural characterization of proteins and complexes using small-angle X-ray solution scattering.

Authors:  Haydyn D T Mertens; Dmitri I Svergun
Journal:  J Struct Biol       Date:  2010-06-15       Impact factor: 2.867

3.  Structural biology: Proteins in dynamic equilibrium.

Authors:  Pau Bernadó; Martin Blackledge
Journal:  Nature       Date:  2010-12-23       Impact factor: 49.962

4.  Protein interactions studied by SAXS: effect of ionic strength and protein concentration for BSA in aqueous solutions.

Authors:  Fajun Zhang; Maximilian W A Skoda; Robert M J Jacobs; Richard A Martin; Christopher M Martin; Frank Schreiber
Journal:  J Phys Chem B       Date:  2007-01-11       Impact factor: 2.991

Review 5.  X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution.

Authors:  Christopher D Putnam; Michal Hammel; Greg L Hura; John A Tainer
Journal:  Q Rev Biophys       Date:  2007-08       Impact factor: 5.318

6.  A tri-block copolymer templated synthesis of gold nanostructures.

Authors:  Ester Falletta; Francesca Ridi; Emiliano Fratini; Chiara Vannucci; Patrizia Canton; Sabrina Bianchi; Valter Castelvetro; Piero Baglioni
Journal:  J Colloid Interface Sci       Date:  2011-01-27       Impact factor: 8.128

  6 in total
  3 in total

1.  Revealing the architecture of protein complexes by an orthogonal approach combining HDXMS, CXMS, and disulfide trapping.

Authors:  Kunhong Xiao; Yang Zhao; Minjung Choi; Hongda Liu; Adi Blanc; Jiang Qian; Thomas J Cahill; Xue Li; Yunfang Xiao; Lisa J Clark; Sheng Li
Journal:  Nat Protoc       Date:  2018-05-24       Impact factor: 13.491

2.  Transferrin receptor 1 is a reticulocyte-specific receptor for Plasmodium vivax.

Authors:  Jakub Gruszczyk; Usheer Kanjee; Li-Jin Chan; Sébastien Menant; Benoit Malleret; Nicholas T Y Lim; Christoph Q Schmidt; Yee-Foong Mok; Kai-Min Lin; Richard D Pearson; Gabriel Rangel; Brian J Smith; Melissa J Call; Michael P Weekes; Michael D W Griffin; James M Murphy; Jonathan Abraham; Kanlaya Sriprawat; Maria J Menezes; Marcelo U Ferreira; Bruce Russell; Laurent Renia; Manoj T Duraisingh; Wai-Hong Tham
Journal:  Science       Date:  2018-01-05       Impact factor: 47.728

3.  Tick receptor for outer surface protein A from Ixodes ricinus - the first intrinsically disordered protein involved in vector-microbe recognition.

Authors:  Anna Urbanowicz; Dominik Lewandowski; Kamil Szpotkowski; Marek Figlerowicz
Journal:  Sci Rep       Date:  2016-04-26       Impact factor: 4.379

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.