Literature DB >> 20481627

Catalytic and molecular beacons for amplified detection of metal ions and organic molecules with high sensitivity.

Xiao-Bing Zhang1, Zidong Wang, Hang Xing, Yu Xiang, Yi Lu.   

Abstract

The catalytic beacon has emerged as a general platform for sensing metal ions and organic molecules. However, few reports have taken advantage of the true potential of catalytic beacons in signal amplification through multiple enzymatic turnovers, as existing designs require either equal concentrations of substrate and DNAzyme or an excess of DNAzyme in order to maintain efficient quenching, eliminating the excess of substrate necessary for multiple turnovers. On the basis of the large difference in the melting temperatures between the intramolecular molecular beacon stem and intermolecular products of identical sequences, we here report a general strategy of catalytic and molecular beacon (CAMB) that combines the advantages of the molecular beacon for highly efficient quenching with the catalytic beacon for amplified sensing through enzymatic turnovers. Such a CAMB design allows detection of metal ions such as Pb(2+) with a high sensitivity (LOD = 600 pM). Furthermore, the aptamer sequence has been introduced into DNAzyme to use the modified CAMB for amplified sensing of adenosine with similar high sensitivity. These results together demonstrate that CAMB provides a general platform for amplified detection of a wide range of targets.

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Year:  2010        PMID: 20481627      PMCID: PMC2917616          DOI: 10.1021/ac1009047

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  45 in total

1.  Catalytic beacons for the detection of DNA and telomerase activity.

Authors:  Yi Xiao; Valeri Pavlov; Tamara Niazov; Arnon Dishon; Moshe Kotler; Itamar Willner
Journal:  J Am Chem Soc       Date:  2004-06-23       Impact factor: 15.419

2.  Accelerated color change of gold nanoparticles assembled by DNAzymes for simple and fast colorimetric Pb2+ detection.

Authors:  Juewen Liu; Yi Lu
Journal:  J Am Chem Soc       Date:  2004-10-06       Impact factor: 15.419

3.  Dissecting metal ion-dependent folding and catalysis of a single DNAzyme.

Authors:  Hee-Kyung Kim; Ivan Rasnik; Juewen Liu; Taekjip Ha; Yi Lu
Journal:  Nat Chem Biol       Date:  2007-10-28       Impact factor: 15.040

4.  Split DNA enzyme for visual single nucleotide polymorphism typing.

Authors:  Dmitry M Kolpashchikov
Journal:  J Am Chem Soc       Date:  2008-02-19       Impact factor: 15.419

5.  One-step, room temperature, colorimetric detection of mercury (Hg2+) using DNA/nanoparticle conjugates.

Authors:  Xuejia Xue; Feng Wang; Xiaogang Liu
Journal:  J Am Chem Soc       Date:  2008-02-23       Impact factor: 15.419

6.  DNAzyme amplification of molecular beacon signal.

Authors:  Ye Tian; Chengde Mao
Journal:  Talanta       Date:  2005-09-15       Impact factor: 6.057

7.  Sensitive and selective amplified fluorescence DNA detection based on exonuclease III-aided target recycling.

Authors:  Xiaolei Zuo; Fan Xia; Yi Xiao; Kevin W Plaxco
Journal:  J Am Chem Soc       Date:  2010-02-17       Impact factor: 15.419

8.  A DNA enzyme that cleaves RNA.

Authors:  R R Breaker; G F Joyce
Journal:  Chem Biol       Date:  1994-12

9.  A DNA enzyme with Mg(2+)-dependent RNA phosphoesterase activity.

Authors:  R R Breaker; G F Joyce
Journal:  Chem Biol       Date:  1995-10

10.  Visible light excitable Zn2+ fluorescent sensor derived from an intramolecular charge transfer fluorophore and its in vitro and in vivo application.

Authors:  Fang Qian; Changli Zhang; Yumin Zhang; Weijiang He; Xiang Gao; Ping Hu; Zijian Guo
Journal:  J Am Chem Soc       Date:  2009-02-04       Impact factor: 15.419

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  21 in total

1.  Label-free catalytic and molecular beacon containing an abasic site for sensitive fluorescent detection of small inorganic and organic molecules.

Authors:  Panshu Song; Yu Xiang; Hang Xing; Zhaojuan Zhou; Aijun Tong; Yi Lu
Journal:  Anal Chem       Date:  2012-03-07       Impact factor: 6.986

Review 2.  Metal-Dependent DNAzymes for the Quantitative Detection of Metal Ions in Living Cells: Recent Progress, Current Challenges, and Latest Results on FRET Ratiometric Sensors.

Authors:  Kevin Hwang; Quanbing Mou; Ryan J Lake; Mengyi Xiong; Brandalynn Holland; Yi Lu
Journal:  Inorg Chem       Date:  2019-07-31       Impact factor: 5.165

Review 3.  Metal ion sensors based on DNAzymes and related DNA molecules.

Authors:  Xiao-Bing Zhang; Rong-Mei Kong; Yi Lu
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2011       Impact factor: 10.745

4.  A Fluorescence Sensor for Lead (II) Ions Determination Based on Label-Free Gold Nanoparticles (GNPs)-DNAzyme Using Time-Gated Mode in Aqueous Solution.

Authors:  Xiao-Yu Wang; Cheng-Gang Niu; Li-Juan Guo; Liu-Yin Hu; Sheng-Quan Wu; Guang-Ming Zeng; Fei Li
Journal:  J Fluoresc       Date:  2016-12-01       Impact factor: 2.217

5.  Fluorescent nanoprobes for sensing and imaging of metal ions: recent advances and future perspectives.

Authors:  JingJing Zhang; FangFang Cheng; JingJing Li; Jun-Jie Zhu; Yi Lu
Journal:  Nano Today       Date:  2016-06-11       Impact factor: 20.722

6.  Quadratic isothermal amplification for the detection of microRNA.

Authors:  Ruixue Duan; Xiaolei Zuo; Shutao Wang; Xiyun Quan; Dongliang Chen; Zhifei Chen; Lei Jiang; Chunhai Fan; Fan Xia
Journal:  Nat Protoc       Date:  2014-02-13       Impact factor: 13.491

7.  Photocaged DNAzymes as a general method for sensing metal ions in living cells.

Authors:  Kevin Hwang; Peiwen Wu; Taejin Kim; Lei Lei; Shiliang Tian; Yingxiao Wang; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2014-10-14       Impact factor: 15.336

Review 8.  DNA as sensors and imaging agents for metal ions.

Authors:  Yu Xiang; Yi Lu
Journal:  Inorg Chem       Date:  2013-12-20       Impact factor: 5.165

9.  Expanding targets of DNAzyme-based sensors through deactivation and activation of DNAzymes by single uracil removal: sensitive fluorescent assay of uracil-DNA glycosylase.

Authors:  Yu Xiang; Yi Lu
Journal:  Anal Chem       Date:  2012-10-29       Impact factor: 6.986

10.  An invasive DNA approach toward a general method for portable quantification of metal ions using a personal glucose meter.

Authors:  Yu Xiang; Yi Lu
Journal:  Chem Commun (Camb)       Date:  2012-12-04       Impact factor: 6.222

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