Literature DB >> 21370984

Metal ion sensors based on DNAzymes and related DNA molecules.

Xiao-Bing Zhang1, Rong-Mei Kong, Yi Lu.   

Abstract

Metal ion sensors are an important yet challenging field in analytical chemistry. Despite much effort, only a limited number of metal ion sensors are available for practical use because sensor design is often a trial-and-error-dependent process. DNAzyme-based sensors, in contrast, can be developed through a systematic selection that is generalizable for a wide range of metal ions. Here, we summarize recent progress in the design of DNAzyme-based fluorescent, colorimetric, and electrochemical sensors for metal ions, such as Pb(2+), Cu(2+), Hg(2+), and UO(2)(2+). In addition, we also describe metal ion sensors based on related DNA molecules, including T-T or C-C mismatches and G-quadruplexes.

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Year:  2011        PMID: 21370984      PMCID: PMC3119750          DOI: 10.1146/annurev.anchem.111808.073617

Source DB:  PubMed          Journal:  Annu Rev Anal Chem (Palo Alto Calif)        ISSN: 1936-1327            Impact factor:   10.745


  138 in total

1.  Accelerated color change of gold nanoparticles assembled by DNAzymes for simple and fast colorimetric Pb2+ detection.

Authors:  Juewen Liu; Yi Lu
Journal:  J Am Chem Soc       Date:  2004-10-06       Impact factor: 15.419

2.  Chemical sensors based on amplifying fluorescent conjugated polymers.

Authors:  Samuel W Thomas; Guy D Joly; Timothy M Swager
Journal:  Chem Rev       Date:  2007-03-27       Impact factor: 60.622

3.  Dissecting metal ion-dependent folding and catalysis of a single DNAzyme.

Authors:  Hee-Kyung Kim; Ivan Rasnik; Juewen Liu; Taekjip Ha; Yi Lu
Journal:  Nat Chem Biol       Date:  2007-10-28       Impact factor: 15.040

4.  One-step, room temperature, colorimetric detection of mercury (Hg2+) using DNA/nanoparticle conjugates.

Authors:  Xuejia Xue; Feng Wang; Xiaogang Liu
Journal:  J Am Chem Soc       Date:  2008-02-23       Impact factor: 15.419

5.  Silver-ion-mediated DNAzyme switch for the ultrasensitive and selective colorimetric detection of aqueous Ag+ and cysteine.

Authors:  Tao Li; Lili Shi; Erkang Wang; Shaojun Dong
Journal:  Chemistry       Date:  2009       Impact factor: 5.236

6.  G-Quadruplex-based DNAzyme as a sensing platform for ultrasensitive colorimetric potassium detection.

Authors:  Tao Li; Erkang Wang; Shaojun Dong
Journal:  Chem Commun (Camb)       Date:  2008-12-05       Impact factor: 6.222

7.  Specific interactions between silver(I) ions and cytosine-cytosine pairs in DNA duplexes.

Authors:  Akira Ono; Shiqi Cao; Humika Togashi; Mitsuru Tashiro; Takashi Fujimoto; Tomoya Machinami; Shuji Oda; Yoko Miyake; Itaru Okamoto; Yoshiyuki Tanaka
Journal:  Chem Commun (Camb)       Date:  2008-08-22       Impact factor: 6.222

8.  Highly sensitive and selective detection of silver ions and silver nanoparticles in aqueous solution using an oligonucleotide-based fluorogenic probe.

Authors:  Yen-Hsiu Lin; Wei-Lung Tseng
Journal:  Chem Commun (Camb)       Date:  2009-09-21       Impact factor: 6.222

9.  A DNA enzyme with Mg(2+)-dependent RNA phosphoesterase activity.

Authors:  R R Breaker; G F Joyce
Journal:  Chem Biol       Date:  1995-10

10.  Label-free fluorescent functional DNA sensors using unmodified DNA: a vacant site approach.

Authors:  Yu Xiang; Zidong Wang; Hang Xing; Ngo Yin Wong; Yi Lu
Journal:  Anal Chem       Date:  2010-05-15       Impact factor: 6.986

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  51 in total

1.  Searching for a DNAzyme Version of the Leadzyme.

Authors:  Runjhun Saran; Qingyun Chen; Juewen Liu
Journal:  J Mol Evol       Date:  2015-10-12       Impact factor: 2.395

Review 2.  Metal-Dependent DNAzymes for the Quantitative Detection of Metal Ions in Living Cells: Recent Progress, Current Challenges, and Latest Results on FRET Ratiometric Sensors.

Authors:  Kevin Hwang; Quanbing Mou; Ryan J Lake; Mengyi Xiong; Brandalynn Holland; Yi Lu
Journal:  Inorg Chem       Date:  2019-07-31       Impact factor: 5.165

3.  A gold nanoparticle-based colorimetric mercury(II) biosensor using a DNA probe with phosphorothioate RNA modification and exonuclease III-assisted signal amplification.

Authors:  Yunpeng Xing; Qian Zhu; Xiaohong Zhou; Peishi Qi
Journal:  Mikrochim Acta       Date:  2020-03-11       Impact factor: 5.833

4.  Pursuing DNA catalysts for protein modification.

Authors:  Scott K Silverman
Journal:  Acc Chem Res       Date:  2015-05-05       Impact factor: 22.384

5.  A highly Sensitive Turn-on Fluorescent Sensor for Ba2+ Based on G-Quadruplexes.

Authors:  Lijun Xu; Yang Chen; Ruihua Zhang; Tian Gao; Yajie Zhang; Xiaoqiang Shen; Renjun Pei
Journal:  J Fluoresc       Date:  2016-11-18       Impact factor: 2.217

6.  Fluorescent nanoprobes for sensing and imaging of metal ions: recent advances and future perspectives.

Authors:  JingJing Zhang; FangFang Cheng; JingJing Li; Jun-Jie Zhu; Yi Lu
Journal:  Nano Today       Date:  2016-06-11       Impact factor: 20.722

7.  Optical Control of Metal Ion Probes in Cells and Zebrafish Using Highly Selective DNAzymes Conjugated to Upconversion Nanoparticles.

Authors:  Zhenglin Yang; Kang Yong Loh; Yueh-Te Chu; Ruopei Feng; Nitya Sai Reddy Satyavolu; Mengyi Xiong; Stephanie M Nakamata Huynh; Kevin Hwang; Lele Li; Hang Xing; Xiaobing Zhang; Yann R Chemla; Martin Gruebele; Yi Lu
Journal:  J Am Chem Soc       Date:  2018-12-04       Impact factor: 15.419

Review 8.  Functional nucleic acid-based hydrogels for bioanalytical and biomedical applications.

Authors:  Juan Li; Liuting Mo; Chun-Hua Lu; Ting Fu; Huang-Hao Yang; Weihong Tan
Journal:  Chem Soc Rev       Date:  2016-03-07       Impact factor: 54.564

9.  Off-on Fluorescent Sensor from On-off Sensor: Exploiting Silver Nanoparticles Influence on the Organic Fluorophore Fluorescence.

Authors:  P S Hariharan; Arvind Sivasubramanian; Savarimuthu Philip Anthony
Journal:  J Fluoresc       Date:  2013-11-28       Impact factor: 2.217

10.  Biochemical and Biophysical Understanding of Metal Ion Selectivity of DNAzymes.

Authors:  Kevin Hwang; Parisa Hosseinzadeh; Yi Lu
Journal:  Inorganica Chim Acta       Date:  2016-04-23       Impact factor: 2.545

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