Literature DB >> 26764017

Bacterial Transcription as a Target for Antibacterial Drug Development.

Cong Ma1, Xiao Yang1, Peter J Lewis2.   

Abstract

Transcription, the first step of gene expression, is carried out by the enzyme RNA polymerase (RNAP) and is regulated through interaction with a series of protein transcription factors. RNAP and its associated transcription factors are highly conserved across the bacterial domain and represent excellent targets for broad-spectrum antibacterial agent discovery. Despite the numerous antibiotics on the market, there are only two series currently approved that target transcription. The determination of the three-dimensional structures of RNAP and transcription complexes at high resolution over the last 15 years has led to renewed interest in targeting this essential process for antibiotic development by utilizing rational structure-based approaches. In this review, we describe the inhibition of the bacterial transcription process with respect to structural studies of RNAP, highlight recent progress toward the discovery of novel transcription inhibitors, and suggest additional potential antibacterial targets for rational drug design.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

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Year:  2016        PMID: 26764017      PMCID: PMC4771368          DOI: 10.1128/MMBR.00055-15

Source DB:  PubMed          Journal:  Microbiol Mol Biol Rev        ISSN: 1092-2172            Impact factor:   11.056


  217 in total

Review 1.  Unraveling the role of helicases in transcription.

Authors:  A Eisen; J C Lucchesi
Journal:  Bioessays       Date:  1998-08       Impact factor: 4.345

Review 2.  Information processing by RNA polymerase: recognition of regulatory signals during RNA chain elongation.

Authors:  R A Mooney; I Artsimovitch; R Landick
Journal:  J Bacteriol       Date:  1998-07       Impact factor: 3.490

3.  RapA, a novel RNA polymerase-associated protein, is a bacterial homolog of SWI2/SNF2.

Authors:  M V Sukhodolets; D J Jin
Journal:  J Biol Chem       Date:  1998-03-20       Impact factor: 5.157

4.  The cyclic structure of microcin J25, a 21-residue peptide antibiotic from Escherichia coli.

Authors:  A Blond; J Péduzzi; C Goulard; M J Chiuchiolo; M Barthélémy; Y Prigent; R A Salomón; R N Farías; F Moreno; S Rebuffat
Journal:  Eur J Biochem       Date:  1999-02

5.  Effects of bicyclomycin on RNA- and ATP-binding activities of transcription termination factor Rho.

Authors:  L Carrano; C Bucci; R De Pascalis; A Lavitola; F Manna; E Corti; C B Bruni; P Alifano
Journal:  Antimicrob Agents Chemother       Date:  1998-03       Impact factor: 5.191

6.  Amanitin greatly reduces the rate of transcription by RNA polymerase II ternary complexes but fails to inhibit some transcript cleavage modes.

Authors:  M D Rudd; D S Luse
Journal:  J Biol Chem       Date:  1996-08-30       Impact factor: 5.157

7.  Transcription termination factor Rho is essential for Micrococcus luteus.

Authors:  W L Nowatzke; E Keller; G Koch; J P Richardson
Journal:  J Bacteriol       Date:  1997-08       Impact factor: 3.490

8.  Identifying the bicyclomycin binding domain through biochemical analysis of antibiotic-resistant rho proteins.

Authors:  A Magyar; X Zhang; F Abdi; H Kohn; W R Widger
Journal:  J Biol Chem       Date:  1999-03-12       Impact factor: 5.157

9.  The antibiotic bicyclomycin affects the secondary RNA binding site of Escherichia coli transcription termination factor Rho.

Authors:  A Magyar; X Zhang; H Kohn; W R Widger
Journal:  J Biol Chem       Date:  1996-10-11       Impact factor: 5.157

Review 10.  Prokaryotes: the unseen majority.

Authors:  W B Whitman; D C Coleman; W J Wiebe
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

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  37 in total

1.  The DUF1013 protein TrcR tracks with RNA polymerase to control the bacterial cell cycle and protect against antibiotics.

Authors:  Marie Delaby; Lydia M Varesio; Laurence Degeorges; Sean Crosson; Patrick H Viollier
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-23       Impact factor: 11.205

2.  The Core and Holoenzyme Forms of RNA Polymerase from Mycobacterium smegmatis.

Authors:  Tomáš Kouba; Jiří Pospíšil; Jarmila Hnilicová; Hana Šanderová; Ivan Barvík; Libor Krásný
Journal:  J Bacteriol       Date:  2019-01-28       Impact factor: 3.490

Review 3.  Discovery, properties, and biosynthesis of pseudouridimycin, an antibacterial nucleoside-analog inhibitor of bacterial RNA polymerase.

Authors:  Sonia I Maffioli; Margherita Sosio; Richard H Ebright; Stefano Donadio
Journal:  J Ind Microbiol Biotechnol       Date:  2018-11-21       Impact factor: 3.346

4.  In Vitro Transcription Assays and Their Application in Drug Discovery.

Authors:  Xiao Yang; Cong Ma
Journal:  J Vis Exp       Date:  2016-09-20       Impact factor: 1.355

5.  Affinity Selection-Mass Spectrometry Identifies a Novel Antibacterial RNA Polymerase Inhibitor.

Authors:  Scott S Walker; David Degen; Elliott Nickbarg; Donna Carr; Aileen Soriano; Mihir Mandal; Ronald E Painter; Payal Sheth; Li Xiao; Xinwei Sher; Nicholas Murgolo; Jing Su; David B Olsen; Richard H Ebright; Katherine Young
Journal:  ACS Chem Biol       Date:  2017-03-31       Impact factor: 5.100

6.  Hijacking the Bacterial Circuitry of Biofilm Processes via Chemical "Hot-Wiring": An Under-explored Avenue for Therapeutic Development.

Authors:  Ingrid K Wilt; Taylor P A Hari; William M Wuest
Journal:  ACS Infect Dis       Date:  2019-04-19       Impact factor: 5.084

Review 7.  Using chemical inhibitors to probe AAA protein conformational dynamics and cellular functions.

Authors:  Jonathan B Steinman; Tarun M Kapoor
Journal:  Curr Opin Chem Biol       Date:  2019-03-23       Impact factor: 8.822

8.  Analysis of the Pseudouridimycin Biosynthetic Pathway Provides Insights into the Formation of C-nucleoside Antibiotics.

Authors:  Margherita Sosio; Eleonora Gaspari; Marianna Iorio; Silvia Pessina; Marnix H Medema; Alice Bernasconi; Matteo Simone; Sonia I Maffioli; Richard H Ebright; Stefano Donadio
Journal:  Cell Chem Biol       Date:  2018-03-15       Impact factor: 8.116

9.  Exploiting phage strategies to modulate bacterial transcription.

Authors:  Markus C Wahl; Ranjan Sen
Journal:  Transcription       Date:  2019-10-30

10.  Benzyl and benzoyl benzoic acid inhibitors of bacterial RNA polymerase-sigma factor interaction.

Authors:  Jiqing Ye; Adrian Jun Chu; Lin Lin; Shu Ting Chan; Rachel Harper; Min Xiao; Irina Artsimovitch; Zhong Zuo; Cong Ma; Xiao Yang
Journal:  Eur J Med Chem       Date:  2020-08-18       Impact factor: 6.514

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